Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre6g04378 | ATGACTCCTCCACCCACCATCTTTCTCTCTGCAGCGGCGCATTTATTTTTCATTTTACTCACAACTACTTGCTCCGCCTCTTTACCGGAGCTCCGATCTCTACTCGAATTCAAAAAAGGCATAACCTCAGATCCAGATGAACGAGTTCTAAACTCATGGAACCTTTCCGCCATCAACGACCTTAACGAATGTCCAACTTCATGGCAAGGAATCTTCTGCGACGAACTCACCGGAAACATCACCGGAATTGTTCTCGACCACTTCAATCTCACCGGAGAATTGAAATTTCAAACTTTACTTGACCTCAAAATGCTGAAAAATCTTAGTCTCGCCGGTAACCAGTTCACCGGAAGGTTACCTCCTTCATTAGGAACGATAACTTCACTTCAGCATTTGGATCTTTCAAACAACAATTTCATCGGTCCAATTCCTGCTCGGATCAACGATCTTTGGGGTCTCAATTACCTCAATTTATCACACAATGATTTCAAAGGTGGATTTCCAACTGGTCTCAATAATCTTCAACAACTTAGGGTTCTCGATTTGCACTCTAACAAACTCTGGGCTGACATTGGTGACCTGATTTCGACTCTTCACAACGTCGAATTTCTTGATTTAAGTCAAAATCAGTTCTATGGTGGACTTTCACTTACTCTTGAAAATGTTTCATCTTTGGCTAATACTGTTCGTTTTTTGAACCTTAGTCGTAACAAATTGAATGGAGAATTTTTCACAAGTGATTCAATTACATTGTTTCGCAACTTACAAGCTTTGGATTTGAGTGATAATTTGATTAAAGGGGAGCTTCCTTCTTTCGGTTCGTTGCCTGAACTTTGGGTTCTGACGCTTGCACGGAATCTCTTCTCTGGTGCTGTTCCTGAAGAGTTGTTGCTGAGTTCAATGTCCTTGCAAGAATTGGATCTTAGCTCTAATGGTTTTTCTGGCTCAATTGCTGTAATTAACTCTACCACTTTAAATGTTTTGGATCTTTCGTCGAATAGATTATCAGGCTCGTTGCCAACATCTTTGGGAAGATGCACAGTCATAGATTTCAGCAGGAATATGTTTTCTGGCGACATTTCTGTAATAGAGAACTGGGAAGCCACTATGGAGGTTATTGATCTGAGTTCAAACAAGCTGTCAGGATCCTTGCCTTCTATTTTAGGGACATATTTAAAATTGTCTACCCTTGACTTAAGTTTTAATGAACTTAATGGATCCATTCCAGTTGGTTTAGTTACTTCAGCATCATTGACCAGACTGAATCTTTCTGGAAATCAATTTACAGGGCCGCTTTTGCTTCATGGTTCAGGGGTAAGTGAATTACTACTTATGCCTCCTGATCAGCCAATGGAATATTTTGATGTATCCAACAACTCTTTAGAAGGTGTCTTGCCTTCTGATATAGGTAGAATGATTAAGCTCAAACAGCTGAATCTGGCAAGGAATGGCTTTTCTGGACAGCTTCCAAATGAATTGAGCAAACTTATTGATTTGGAGTACCTCGATTTGTCTAACAACAAATTTACTGGAAATATTCCCGATAAGCTTTCAAATAACTTGACTGTATTTAATGTGTCCAATAATGATCTATCTGGCCCTGTTCCCAAAGATTTGCGGCGGTTTCCTTCTGCATCCTTTCACCCTGGAAATGAAAAGCTAAAGTTACCAAATAATTCTCCTGAACGTTCTGCTGCACTGCCAGATAATCCAGATGAAGGTAACCATCATATTTCAAAGAGTAATATCAGGATAGCAATTATCCTTGCTTCTGTAGGGGCTGCTGTGATGATTGCTTTTGTTTTATTGGCTTATCATCGATCACAAGCGAAAGAATTTCGCGGGAGAAGTGATTTTGCTGGCCCAGCTACTGGAAGAGATGCCAAGTTAGGAGGACTTTCAAGGCCTTCCCTCTTCAAGTTCCATACAAATGCTCAACCCTCATCATCTTCACTTAGCTTTTCAAATGATCACTTATTGACATCCAATTCAAGGTCACTTTCTGGACAGCAGTCAGAGTTTATAACTGAAATTTCTGAGCACTGTTTGCCTGAGGGAGTGGTAGCAACCAGTTCAGCACCTCCTAATTTGATGGATAACCCTCCCATGTCATCTGGAAGGAAGTCTTCTCCTGGTTCCCCATTGTCGTCCTCACCACGCTTTATAGAGGCTTGTGAAAAGCCTGTGATGTTGGACGTTTACTCACCAGATCGACTGGCCGGAGAACTCTTTTTCCTGGATTCTTCACTAGCATTCACTGCAGAGGAATTATCTCGAGCTCCAGCTGAAGTTCTCGGAAGAAGTAGCCATGGCACTCTGTACAAAGCTACTATAGACAATGGTCATATGTTGACTGTAAAATGGTTAAGGGTGGGGCTGGTCAAACTTAAAAAGGAATTTGCTAGAGAAGTCAAAAAGATCGGTTCTATGAGGCATCCAAACATTGTCCCGTTACTAGCATACTATTGGGGGCCTAGGGAACAGGAGAGGCTTCTTTTAGCTGACTACATTCACGGAGACAACTTGGCCCTCCATCTCTATGAGACAACACCCCGGAGGTACTCGCCATTGTCATTCAGCCAGAGAATAAGGGTTGCAGTTGAAGTTGCAAGATGTCTTTTATACCTACATGATCGAGGGCTTCCCCATGGAAATCTGAAGCCGACAAATATTCTGTTAGCAGGCCCTGAATACAGTGTTTGTCTTACTGACTATGGTTTGCATCGGCTCATGACACCAGCTGGAGTTGCAGAGCAGATGCTAAATCTAGGAGCACTCGGATACCGCGCTCCAGAACTTGCTTCTGCTTCCAAACCACTTCCATCCTTTAAAGCCGATGTGTATGCGCTTGGGGTGATCCTAATGGAATTATTAACAAGAAAAAGTGCAGGTGACATAATATCTGGACAATCAGGTGCTGTCGATCTTACAGATTGGGTTAGGCTGTGTGAAAGAGAAGGAAGGGTAATGGACTGTATAGACAGAGACATTGCAGGTGGTGAAGAATCCTCTAAAGAGATGGACCAACTTCTTGCAACATCTCTCAGGTGTATTCTCCCTGTAAATGAAAGGCCCAACATCCGACAAGTTTTTGAAGATCTCTGTTCTATATCATCATCAGCTTGA | 3126 | 0.4207 | MTPPPTIFLSAAAHLFFILLTTTCSASLPELRSLLEFKKGITSDPDERVLNSWNLSAINDLNECPTSWQGIFCDELTGNITGIVLDHFNLTGELKFQTLLDLKMLKNLSLAGNQFTGRLPPSLGTITSLQHLDLSNNNFIGPIPARINDLWGLNYLNLSHNDFKGGFPTGLNNLQQLRVLDLHSNKLWADIGDLISTLHNVEFLDLSQNQFYGGLSLTLENVSSLANTVRFLNLSRNKLNGEFFTSDSITLFRNLQALDLSDNLIKGELPSFGSLPELWVLTLARNLFSGAVPEELLLSSMSLQELDLSSNGFSGSIAVINSTTLNVLDLSSNRLSGSLPTSLGRCTVIDFSRNMFSGDISVIENWEATMEVIDLSSNKLSGSLPSILGTYLKLSTLDLSFNELNGSIPVGLVTSASLTRLNLSGNQFTGPLLLHGSGVSELLLMPPDQPMEYFDVSNNSLEGVLPSDIGRMIKLKQLNLARNGFSGQLPNELSKLIDLEYLDLSNNKFTGNIPDKLSNNLTVFNVSNNDLSGPVPKDLRRFPSASFHPGNEKLKLPNNSPERSAALPDNPDEGNHHISKSNIRIAIILASVGAAVMIAFVLLAYHRSQAKEFRGRSDFAGPATGRDAKLGGLSRPSLFKFHTNAQPSSSSLSFSNDHLLTSNSRSLSGQQSEFITEISEHCLPEGVVATSSAPPNLMDNPPMSSGRKSSPGSPLSSSPRFIEACEKPVMLDVYSPDRLAGELFFLDSSLAFTAEELSRAPAEVLGRSSHGTLYKATIDNGHMLTVKWLRVGLVKLKKEFAREVKKIGSMRHPNIVPLLAYYWGPREQERLLLADYIHGDNLALHLYETTPRRYSPLSFSQRIRVAVEVARCLLYLHDRGLPHGNLKPTNILLAGPEYSVCLTDYGLHRLMTPAGVAEQMLNLGALGYRAPELASASKPLPSFKADVYALGVILMELLTRKSAGDIISGQSGAVDLTDWVRLCEREGRVMDCIDRDIAGGEESSKEMDQLLATSLRCILPVNERPNIRQVFEDLCSISSSA | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre6g04378 | 1041 | SUPERFAMILY | RNI-like | 107 | 530 | - | - | |
| Trre6g04378 | 1041 | MobiDBLite | consensus disorder prediction | 535 | 575 | - | - | |
| Trre6g04378 | 1041 | Gene3D | Ribonuclease Inhibitor | 450 | 552 | IPR032675 | - | |
| Trre6g04378 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 759 | 1041 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre6g04378 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 29 | 74 | IPR013210 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 275 | 299 | IPR003591 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 323 | 346 | IPR003591 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 174 | 198 | IPR003591 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 126 | 150 | IPR003591 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 496 | 520 | IPR003591 | - | |
| Trre6g04378 | 1041 | SMART | LRR_typ_2 | 252 | 274 | IPR003591 | - | |
| Trre6g04378 | 1041 | FunFam | Leucine-rich repeat receptor-like protein kinase | 744 | 836 | - | - | |
| Trre6g04378 | 1041 | Pfam | Leucine Rich repeat | 415 | 430 | IPR001611 | GO:0005515 | |
| Trre6g04378 | 1041 | Pfam | Leucine Rich repeat | 300 | 317 | IPR001611 | GO:0005515 | |
| Trre6g04378 | 1041 | Gene3D | Ribonuclease Inhibitor | 192 | 299 | IPR032675 | - | |
| Trre6g04378 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 762 | 1034 | IPR011009 | - | |
| Trre6g04378 | 1041 | Pfam | Protein kinase domain | 763 | 1031 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre6g04378 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 838 | 1041 | - | - | |
| Trre6g04378 | 1041 | MobiDBLite | consensus disorder prediction | 689 | 718 | - | - | |
| Trre6g04378 | 1041 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 445 | 538 | - | - | |
| Trre6g04378 | 1041 | PANTHER | OS07G0626500 PROTEIN | 9 | 105 | - | - | |
| Trre6g04378 | 1041 | Gene3D | Ribonuclease Inhibitor | 30 | 191 | IPR032675 | - | |
| Trre6g04378 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 740 | 836 | - | - | |
| Trre6g04378 | 1041 | ProSiteProfiles | Leucine-rich repeat profile. | 254 | 276 | IPR001611 | GO:0005515 | |
| Trre6g04378 | 1041 | FunFam | Pollen receptor-like kinase 1 | 837 | 1041 | - | - | |
| Trre6g04378 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 223 | 441 | - | - | |
| Trre6g04378 | 1041 | FunFam | Nuclear pore complex protein NUP107 | 28 | 193 | - | - | |
| Trre6g04378 | 1041 | Pfam | Leucine Rich repeats (2 copies) | 103 | 144 | IPR025875 | - | |
| Trre6g04378 | 1041 | MobiDBLite | consensus disorder prediction | 693 | 717 | - | - | |
| Trre6g04378 | 1041 | Gene3D | Ribonuclease Inhibitor | 300 | 440 | IPR032675 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre6g04378 | Trre-Chr6 | 47030305 | 47036209 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre6g04378 | 21 | 539 | Receptor kinase-like Gene Family | AT5G65700 | 30.503 | 5.87e-47 | 181 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-III | Trre6g04378 | Pkinase | 7.2e-29 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre6g04378 | - | - | gmx:100802768 | 1628.61 |