Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04377 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATCATCATCATCATCATGTTTCAAATAACTCTCATCAGATGGGAAGAAGACATATGTTAGGTCCACCAGGAACCCTAAATACTATAACACCTTGTGCAGCATTTTTTGGTGCTAGCAATGTCTCCAAGATGCTAATGGAGGTAGCAGAGTGTTCAAGAGCAGATGCTGCAAATAGTCTTGTTTATGAAGCAAATGTAAGATTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCTGCATTACAACAACAGGTTCAATCTTTACAAGCTGAACTCAATCTATTAAGAAGTGAAATACTTAAATACAAATTAAGAGAAGCAGCTAACATCAACATGAACAATATGAATATGAATAATATGCTACAAGCTTCTCCTCATCATCATCATGTTTCTATGCTTCCTTCTAATTCCTCATTGGCTGTTTCAATTGCTTCTCCACCACCGCCGCCGCCGCCACCACCACCTCCTCCTCCTCTTCCTCCAACTTCTAATTCATCTTCTTCCATATACTTCCAAGAGAGGGATCCCAACAACTATAGCACAATTTCAAGTGATGATAATATTTCCTATTTTGGTTAA 642 0.3879 MSRERERFDEIGKKIKREGDHHHHHHVSNNSHQMGRRHMLGPPGTLNTITPCAAFFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNLLRSEILKYKLREAANINMNNMNMNNMLQASPHHHHVSMLPSNSSLAVSIASPPPPPPPPPPPPPLPPTSNSSSSIYFQERDPNNYSTISSDDNISYFG 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04377 213 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Trre6g04377 213 MobiDBLite consensus disorder prediction 185 213 - -
Trre6g04377 213 MobiDBLite consensus disorder prediction 164 184 - -
Trre6g04377 213 MobiDBLite consensus disorder prediction 14 36 - -
Trre6g04377 213 MobiDBLite consensus disorder prediction 159 213 - -
Trre6g04377 213 Pfam Mitochondrial fission regulator 104 191 IPR007972 -
Trre6g04377 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 55 153 - -
Trre6g04377 213 Pfam Lateral organ boundaries (LOB) domain 50 117 IPR004883 -
Trre6g04377 213 MobiDBLite consensus disorder prediction 18 32 - -
Trre6g04377 213 Coils Coil 99 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04377 Trre-Chr6 47019491 47020790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04377 5 137 AS2 family AT2G30340 46.707 3.64e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g04377 Mito_fiss_reg 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04377 - - gmx:100790799 221.861