Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04350 ATGTCGTTTCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAGTCCCTGACGATTTCGACCTAGAAATGGATCCCTTCGACTTCGACGCTTCTCCGATCCAATTCCAAGATCCACAACCACCACACGACGACCTTCTCTCTTCCTACATTGATTCCGATAATTCCGGATCCAAACTCAATTCTCCCACCGCCATTAATGCAGCAGATACCGCTAGACCTAGTCACCGCCGAAGCAATTCCGCCGAAACTTCTTCTTCCTTGTTATCAGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTCGCTCAGTTGTGGACCGTTGATCCCAAACGCGCCAAGAGGATTCTGGCAAATCGTCAATCTGCAGCGCGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGAAAAATTCATACTCTTCAAACTGAAGCAACAACTCTTTCTGCTCAATTAAATCTTTTTCAGAGAGATACAAGTGGTCTGTCTAGTGAAAATACTGAGTTGAAGCTTCGATTACAAGCAATGGAGCAACAAGCTAAGTTATGTGATGCTCTAAATGACGCATTGAAGAACGAAGTTGATAGGCTCAAGTTTGCTACTGGAGAGGTAACAACCCATGCTGATACCTATGGTTTGGGAATGCATCAACTTTCATATTCTCAAGCTTCATCCTTCCTGCACCAACCACAACATGCTCCGAGTCCGAATGAACTTCAGGCCATGCAAATGCAGCAGTTTCATTCAGTCTCTTCTAACGCATCCACTCCCCACCATCCTCAGTTTGATCTACCCACTCAATATGATTTATCAGAAATGTTGTCAAGTGATTCTATCGGCCAGTTTCAGGGGCTTGACATTGGCCACAAGGTTTCTCATGTTCTGATGCCCGATGGTCCCTCCATTTCTGTTAATAAAACCAACAACGCCTTTTGA 954 0.4476 MSFPFHRRSQSEVHFRVPDDFDLEMDPFDFDASPIQFQDPQPPHDDLLSSYIDSDNSGSKLNSPTAINAADTARPSHRRSNSAETSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQRDTSGLSSENTELKLRLQAMEQQAKLCDALNDALKNEVDRLKFATGEVTTHADTYGLGMHQLSYSQASSFLHQPQHAPSPNELQAMQMQQFHSVSSNASTPHHPQFDLPTQYDLSEMLSSDSIGQFQGLDIGHKVSHVLMPDGPSISVNKTNNAF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04350 317 SMART brlzneu 110 174 IPR004827 GO:0003700|GO:0006355
Trre6g04350 317 SUPERFAMILY Leucine zipper domain 114 168 IPR046347 GO:0003700|GO:0006355
Trre6g04350 317 MobiDBLite consensus disorder prediction 50 89 - -
Trre6g04350 317 MobiDBLite consensus disorder prediction 28 89 - -
Trre6g04350 317 Coils Coil 137 157 - -
Trre6g04350 317 FunFam probable transcription factor PosF21 113 166 - -
Trre6g04350 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 112 175 IPR004827 GO:0003700|GO:0006355
Trre6g04350 317 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 255 - -
Trre6g04350 317 Coils Coil 179 199 - -
Trre6g04350 317 CDD bZIP_plant_RF2 115 164 IPR044759 GO:0003700|GO:0006355
Trre6g04350 317 Pfam bZIP transcription factor 114 172 IPR004827 GO:0003700|GO:0006355
Trre6g04350 317 Gene3D - 113 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04350 Trre-Chr6 46725338 46728482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04350 4 293 bZIP Transcription Factor Family AT2G40620 51.227 1.37e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre6g04350 bZIP_1 7.8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04350 - - aprc:113852914 423.32