Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04349 ATGTCTCTCAATCAACGCCTCCACCGTCTCTTACTCAACACGGATTCAGCTTCAACAACTGCTTCAGGTAACATGAATAAACCAACGGAATCTTTTGCAGTCGCAGGTGATACAAATTTCGATACCAACATGGTGTTTATCTTAGCAGCTTTACTTTGTGCACTTATTTTAGTATTAGGACTCAACTCAATTGTAAGGTGTGCTCTAAGATGTGGTCACAGGTATGCTTTCGAGACACAAGACGAAAGAATAGCTCGTTTAACATCAAAGGGTTTAAAGAAGAGTGCATTGCGTAAGATACCTATAGTTGTTTATGATTCAGGTAGTATTAGTACTAGTTTTGTAGCCACAGATTGTCCAATTTGTCTTGGAGAGTTTATGGATGGTGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTTCATGTTAAGTGTATAGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAATCTTTGCTTGAGTATCCAACTAGCTCTGAAGCTTCATCTGTGGCTGTGATTGTTGCTGCAGCTGTAGGGACCATAAATTAA 567 0.3933 MSLNQRLHRLLLNTDSASTTASGNMNKPTESFAVAGDTNFDTNMVFILAALLCALILVLGLNSIVRCALRCGHRYAFETQDERIARLTSKGLKKSALRKIPIVVYDSGSISTSFVATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDKWLLSHSSCPTCRQSLLEYPTSSEASSVAVIVAAAVGTIN 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04349 188 SUPERFAMILY RING/U-box 99 167 - -
Trre6g04349 188 CDD RING-H2_EL5-like 118 161 - -
Trre6g04349 188 PANTHER RING-H2 FINGER PROTEIN ATL78 9 169 IPR044602 GO:0016567|GO:0016740
Trre6g04349 188 SMART ring_2 119 160 IPR001841 -
Trre6g04349 188 SMART FANCL_C_2 115 174 - -
Trre6g04349 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 166 IPR013083 -
Trre6g04349 188 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Trre6g04349 188 FunFam RING-H2 finger protein ATL72-like 83 165 - -
Trre6g04349 188 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04349 Trre-Chr6 46722212 46722778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04349 7 174 C3H Transcription Factor Family AT3G10910 54.494 9.88e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04349 - K19040 mtr:25489830 277.33