Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04348 ATGTCACTCCGTCAACGTCTCCACCGTCTTTTACTCGACACAAATTCAGCTTCAAAAACTACATCAGGTGACTTCAAGTTTGTCATAAAGTTGGCGCTTATACCAGCAGCTTTAGCACTTTTTTTTGTAGGACTAGACTTAATTGTAAAGTGTATATCAAATGGTTTAAAAAAAAGAGCATTGTGTAAGATCCCTATGGTTGTTTATGGTTCAGGTAGTATTAGTACTAGTTTTATAGGCACAGATTGTCCAATTTGTCTTGGGGAGTTTATTGATGGTGAGAAAGTTAGAGTATTGCCAAAATGTAACCATGGATTCCATGTAGAGTGTATAGATAAATGGTTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCCAACTACCTCTGAAGATTCATCTGAACCTGTGATTGTTGTTGCAGTGCAGCTGTAG 450 0.38 MSLRQRLHRLLLDTNSASKTTSGDFKFVIKLALIPAALALFFVGLDLIVKCISNGLKKRALCKIPMVVYGSGSISTSFIGTDCPICLGEFIDGEKVRVLPKCNHGFHVECIDKWLLSHSSCPTCRQSLLEYPTTSEDSSEPVIVVAVQL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04348 149 SMART ring_2 83 124 IPR001841 -
Trre6g04348 149 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Trre6g04348 149 CDD RING-H2_EL5-like 82 125 - -
Trre6g04348 149 PANTHER RING-H2 FINGER PROTEIN ATL78 52 134 IPR044602 GO:0016567|GO:0016740
Trre6g04348 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 130 IPR013083 -
Trre6g04348 149 Pfam Ring finger domain 82 125 IPR001841 -
Trre6g04348 149 SUPERFAMILY RING/U-box 78 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04348 Trre-Chr6 46720505 46720954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04348 53 133 C3H Transcription Factor Family AT3G10910 69.512 1.71e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04348 - K19040 tpra:123913418 199.519