Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04346 ATGTCCTCCGATGACATCAATCTCGCTCCTGATCAGAGAATCGAAAACGGCCTAACCTCCCCACTCGTCTTCCAAGACGACACTCTGCGTTTCAACTGCGGCACCGCACCACAGCGACAGGTCGGTGATCCGGTTTCTAAAACCCGTGAAGTCAGCGGTTTCATTGACGACAAGATGTTCACCGTTAATCGCGATCGGTTTTTCACTTCCCAGGGTACGGAGTTCCGCCGGAACGTTTTCGCCGATCGGTCTGACCACAGGGACAGTTCAGATGTACTGAACTGGAGCGCGGGAACTCCAAGCAGCGATGATTCTGATGGGGAAGACGATGAAGATGATGACGAAGACGATGATGGAGGAGACACCGCAGCAGATAGACTCGTTAGTATTGCTAACGACGAAAGCAAACGCAATTCCAATGCAATTATTGATGTTAACAATAACAATGGTGGCGGTGTTGCAAATGGGAAAGCTCAGCATCATTCTCCTTATGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACAGTTAGTGCATAACAATGCGAGTGGCGCTACTGGTGTGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACTCTGTAACTGTTGCTGAAACAGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGGAGAAAGGATGCCGTGTATTCAAGCGAGTCTGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACGCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGAAGGCTTGTTGTACTTGTTCTCAACCCACACTGGAGGAGTCAATATCTCCAAATCTTTCACTTCGAGATGCTGTGCAGGCATACCGTCGGGAAGAAGAATCACAATTTTACCGGTCATCCAAAAGAAAAAGAGAACGATTGGATCAGGGTGGTTTTGGAGAGTGCGCTGTTGTTGAACCCTCAAGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGACAGACCGGGTTATCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGTCTGAATGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGATCCCTTGCTAAGGTTTCCGACGATCCTTCAAAACCTGTCTCCAGTAACATGGGACCTAATTGGCTTCAGATTTGCCGAACAACATCATAA 1329 0.4612 MSSDDINLAPDQRIENGLTSPLVFQDDTLRFNCGTAPQRQVGDPVSKTREVSGFIDDKMFTVNRDRFFTSQGTEFRRNVFADRSDHRDSSDVLNWSAGTPSSDDSDGEDDEDDDEDDDGGDTAADRLVSIANDESKRNSNAIIDVNNNNGGGVANGKAQHHSPYVSSREILGKDGEIVQLVHNNASGATGVDQLRERLGKTQNSVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDDNGCGFSGRKDAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTLEESISPNLSLRDAVQAYRREEESQFYRSSKRKRERLDQGGFGECAVVEPSRSRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPVSSNMGPNWLQICRTTS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04346 442 MobiDBLite consensus disorder prediction 86 123 - -
Trre6g04346 442 SUPERFAMILY RING/U-box 255 327 - -
Trre6g04346 442 MobiDBLite consensus disorder prediction 103 121 - -
Trre6g04346 442 ProSiteProfiles U-box domain profile. 256 328 IPR003613 GO:0004842|GO:0016567
Trre6g04346 442 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 5 428 - -
Trre6g04346 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 326 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04346 Trre-Chr6 46678909 46683868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04346 204 435 Plant U-box Gene Family AT5G05230 62.343 1.22e-88 272