Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04345 ATGGAAGCTTCATCCAAAATGAGAGTTATGAGAGTGTTTTTTGTGTGCTTGTTCTTGCTGTTTCTGGTGACTGTGACAGCTGTGAATCCGTCTTTAAACGATGACGTTTTGGGGTTGATTGTGTTCAAAGCGGATATACAAGATCCGAAAGGAAAGTTAGCATCTTGGAATGAAGATGATGAGAGTGCTTGTGGTGGTAGTTGGGTTGGAGTCAAATGTAACCCTAGATCCAATAGGGTTGTGGAGGTTAACCTTAATGGGTTTTCTTTATCTGGAAGAATTGGTCGTGGTTTACAACGTTTGCAATTTCTTCGTAGGCTTTATTTGGCGAATAATAATCTTACTGGGAGTATAACCCCTAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGCAATAATAATCTTTCAGGGGTTGTTCCTGATGATTTTTTTCGACAATGTGGGTCTATGAGAGTTGTTTCTTTGGCGGGGAACATGTTTTCAGGGAATGTTCCTTCAAGTATAGGTTCATGTTCAGCTATTGCTAGTATTGATTTGTCTGCTAACCAGTTTTCTGGTTCTGTTCCTAAGGAGATTTGGAGTTTGAGTGGGCTTAGGTCTCTTGATTTGTCTGATAATTTATTGGAAGGTGAGATTCCTGAAGGAGTTTCGGCGTTGAAGAATTTGCGGAGCATTAACTTGGCTAGAAATAGCTTTTCTGGGAAGATACCAGATGGGTTTGGAAGTTGTTTGCTTTTGAGGTCTATTGATTTTGGTGATAATTCTTTCTCTGGTAACATACCTAATGATTTGAAGGAATTGGTGTTGTGTGGTTACTTTAGTCTGGGTGGAAACGCTTTCTCAGGAGATGTTCCCGAGTGGATTGGAGATTTGAAGGGTCTTCAGACATTGGATCTTTCTAGGAATAGATTTTCTGGTATGGTACCTAACTCTTTAGGAAATCTTTGGTCCTTGAAAACATTGAATCTTTCTGGAAATGGTTTGACTGGTAATCTTCCCGAGTCTATGGCGAATTGCACGAATCTCTTGGCCTTGGATGTTGGCCTAAATTCATTGTCTGGAGATCTTCCATCGTGGATTTTCAAGTCGGACTTGGAGAAGGTTTTGGTAGGTGAAAACAAAATGAGTGGTAGGGCGAAAAGTTCTTTGTATTCCTTGACTGAAGTTGCTGTTCAGAGTCTTCAAGTGTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACTTCTGCTATTTCGGGTTTAAGCAGCTTGCAGGTTTTGAATTTATCATATAACTCTCTGACAGGCCATGTTCCGTCTGCAATTGGTGGTTTAAAAACATGTTCTAGTCTTGATTTGAGTAATAATAAGCTAAATGGAAGTATACCTCTGGAAATTGGTGGAGCTGTTTCCTTGAAAGAGCTGAATTTGGAAAACAACTTCCTTATTGGGAAAATTCCAATCTCAATTGAGAACTGCTCTTCACTAACAACATTGATTCTGTCGAAGAACAAGCTGAGTGGGTCGATACCTGCAGCAGTTGCAAAACTCACCAACCTGAAAACTGTGGACATATCATTTAACAACCTTACTGGAGACCTTCCCAAGCAATTGGCCAACCTTCCCAATCTCGTGACCTTCAATTTATCTCACAACAACCTTGAGGGTGAACTACCGGCTGGTGGTTTCTTCAACACCATTTCGCCTTCCTCCGTTTCTGGCAATCCATTTATTTGTGGCTCTGTTGTGAACAAAAAGTGCCCTGTTAAACTCCCAAAGCCTATTGTTCTGAATCCCAACTTTTCTCCTGACGCTGACACTGGTTCGCCTACTCCAACGTTAGGTCACAAAAGAAATATCCTCAGCATTTCAGCACTCATTGCCATTGGTGCAGCTGCTTTCATTGTGATTGGTGTCATTGGAATAACTGTTCTCAACCTCCGTGTTCGGTCCACCGCATCTCGATCTGCAGCTGCCCTTGCTTTTTCTGCAGGGGACGAATTCAGCCGTTCGCCAACAACAGACGCAAACTCCGGCAAGCTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGTGCTCACGCCTTGCTGAACAAGGATTGCGAGCTGGGGCGTGGAGGGTTTGGAGCTGTGTACCAAACAGTTCTTGGAGACGGGCGTTCGGTTGCTATAAAGAAGCTCACCGTGTCAAGCCTCGTCAAGTCTCAAGAAGATTTCGAGAGGGAAGTGAAGAAATTAGGGAAAGTCAGACACCAAAACCTCGTCGAACTCGAAGGCTATTATTGGACTTCATCGCTACAACTCCTCATATACGAGTTTGTCTCCCGTGGCAGCCTATACAAGCATCTCCACGAAGGATCAGGTGAAAACTTCCTCTCGTGGAACGAGAGGTTCAATGTCATTCTCGGTACTGCCAAGGCCTTATCTCACTTGCACCACTCCAACATCATTCACTACAACATTAAGTCAACCAACGTCCTTATCGATAGCTACGGCGAACCTAAAGTAGGGGATTACGGCCTAGCAAGGCTGCTACCAATGCTCGACCGCTACGTATTGAGCAGCAAAATTCAGAGCGCACTGGGCTACATGGCACCAGAATTTGCCTGCAAGACAGTAAAAATCACCGAAAAGTGCGATGTTTATGGATTCGGAGTATTGGTTTTGGAGATTGTGACAGGTAAGAGGCCAGTAGAGTACATGGAGGATGACGTGGTCGTACTTTGTGACATGGTTAGAGGAGCATTGGACGAAGGGAGAGTAGAGGAATGCATCGATGAGAGACTTCAAGGGAAGTTTCCAGTAGAGGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAATAGGCCAGAAATGGGAGAGGTAGTTACCATATTGGAACTTATAAGATGCCCCTCAGGTTCAGATGGACAAGAAGAGTTATTGGGATGA 2946 0.4325 MEASSKMRVMRVFFVCLFLLFLVTVTAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVEVNLNGFSLSGRIGRGLQRLQFLRRLYLANNNLTGSITPNIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRVVSLAGNMFSGNVPSSIGSCSAIASIDLSANQFSGSVPKEIWSLSGLRSLDLSDNLLEGEIPEGVSALKNLRSINLARNSFSGKIPDGFGSCLLLRSIDFGDNSFSGNIPNDLKELVLCGYFSLGGNAFSGDVPEWIGDLKGLQTLDLSRNRFSGMVPNSLGNLWSLKTLNLSGNGLTGNLPESMANCTNLLALDVGLNSLSGDLPSWIFKSDLEKVLVGENKMSGRAKSSLYSLTEVAVQSLQVLDLSHNAFSGEITSAISGLSSLQVLNLSYNSLTGHVPSAIGGLKTCSSLDLSNNKLNGSIPLEIGGAVSLKELNLENNFLIGKIPISIENCSSLTTLILSKNKLSGSIPAAVAKLTNLKTVDISFNNLTGDLPKQLANLPNLVTFNLSHNNLEGELPAGGFFNTISPSSVSGNPFICGSVVNKKCPVKLPKPIVLNPNFSPDADTGSPTPTLGHKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTASRSAAALAFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLSWNERFNVILGTAKALSHLHHSNIIHYNIKSTNVLIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLQGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSGSDGQEELLG 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04345 981 ProSiteProfiles Leucine-rich repeat profile. 127 148 IPR001611 GO:0005515
Trre6g04345 981 SUPERFAMILY Protein kinase-like (PK-like) 698 967 IPR011009 -
Trre6g04345 981 Pfam Protein tyrosine and serine/threonine kinase 697 962 IPR001245 GO:0004672|GO:0006468
Trre6g04345 981 Gene3D Ribonuclease Inhibitor 296 587 IPR032675 -
Trre6g04345 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 588 - -
Trre6g04345 981 SUPERFAMILY L domain-like 277 568 - -
Trre6g04345 981 Pfam Leucine rich repeat 277 331 IPR001611 GO:0005515
Trre6g04345 981 Pfam Leucine rich repeat 492 551 IPR001611 GO:0005515
Trre6g04345 981 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Trre6g04345 981 Gene3D Ribonuclease Inhibitor 192 289 IPR032675 -
Trre6g04345 981 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 313 - -
Trre6g04345 981 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Trre6g04345 981 SMART LRR_sd22_2 514 540 - -
Trre6g04345 981 SMART LRR_sd22_2 394 420 - -
Trre6g04345 981 SMART LRR_sd22_2 198 221 - -
Trre6g04345 981 SMART LRR_sd22_2 125 146 - -
Trre6g04345 981 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Trre6g04345 981 PRINTS Leucine-rich repeat signature 418 431 - -
Trre6g04345 981 PRINTS Leucine-rich repeat signature 128 141 - -
Trre6g04345 981 CDD STKc_IRAK 701 967 - -
Trre6g04345 981 Gene3D Transferase(Phosphotransferase) domain 1 772 975 - -
Trre6g04345 981 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Trre6g04345 981 Pfam Leucine Rich Repeat 468 490 IPR001611 GO:0005515
Trre6g04345 981 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515
Trre6g04345 981 Pfam Leucine Rich Repeat 127 146 IPR001611 GO:0005515
Trre6g04345 981 Gene3D Phosphorylase Kinase; domain 1 689 771 - -
Trre6g04345 981 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 194 965 - -
Trre6g04345 981 SUPERFAMILY RNI-like 83 382 - -
Trre6g04345 981 ProSiteProfiles Protein kinase domain profile. 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04345 981 SMART LRR_typ_2 198 222 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 538 562 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 101 124 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 514 537 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 294 317 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 418 442 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 318 342 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 394 417 IPR003591 -
Trre6g04345 981 SMART LRR_typ_2 125 148 IPR003591 -
Trre6g04345 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 689 771 - -
Trre6g04345 981 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 772 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04345 Trre-Chr6 46631279 46635005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04345 12 976 Receptor kinase-like Gene Family AT3G56370 67.868 0.0 1271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Trre6g04345 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04345 - - mtr:25489825 1676.76