Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04342 ATGGCTTCTGGTTCTTCTTCTTCTTCTTCAAATTGGGTGATGGAAAGTGGTGACATTCCACATGTTCTAGCTGTTGATGATTCTCTTGTTGATCGAAAACTTGTTGAGAAACTTCTTAGGAATTCCTCTTGCAAAGTTACAACTGCTGAAAATGGGCCTAAGGCATTGGAGCTATTGGGCTTGTCAAGTGGTGGACAGAACACCTTGAATGGAAGATCCAAAGTAAATTTAGTTATCACAGACTATTGCATGCCAGGAATGACTGGCTATGAGTTACTTAAGAAAATTAAGCAATCATCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACAAGGGTCAACAAGTGTCTAGAAGAAGGAGCTCAGATGTTCATATTAAAGCCCCTCAAACAATCTGATGTAAAACAATTGACATGTCAGTTAATGAATTTGGGAAGGTGA 459 0.3922 MASGSSSSSSNWVMESGDIPHVLAVDDSLVDRKLVEKLLRNSSCKVTTAENGPKALELLGLSSGGQNTLNGRSKVNLVITDYCMPGMTGYELLKKIKQSSVMKEVPVVIMSSENIPTRVNKCLEEGAQMFILKPLKQSDVKQLTCQLMNLGR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04342 152 ProSiteProfiles Response regulatory domain profile. 21 148 IPR001789 GO:0000160
Trre6g04342 152 CDD REC_typeA_ARR 22 143 - -
Trre6g04342 152 Gene3D - 21 152 - -
Trre6g04342 152 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
Trre6g04342 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 147 IPR045279 GO:0009736
Trre6g04342 152 SUPERFAMILY CheY-like 20 149 IPR011006 -
Trre6g04342 152 SMART REC_2 20 144 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04342 Trre-Chr6 46600981 46602474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04342 1 149 Response Regulator Gene Family AT3G56380 64.238 6.24e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g04342 Response_reg 1.4e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04342 K14492 - gmx:100499827 270.781