Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04341 ATGAGTATTATTTTACATCATGAAAGTGCTTCTTCAAAGATGAAGGAGTTACTCATAAAAGAACTTATTCAGGGTAAAGAATATGCTACTCAACTCAAGTTTATGCTTAACAATCATGTTGACTCTGATGGATCTGTTTCTGTTAAAGAATTAGTTAGCAATGTGTTGAGAACTTTCTCTCAGACTATTTCTGTGATGAATTCTTCTGAAGCATGTAATTTTGATGAAGTTGCTCAGAATCATCTTGTGAATAATAATAATTCAGGGGAAGATGGTTCATTAGTTGCAGCTTCTTGTAATGATGATGTTAAATCTGAAGATTCAAGTGAGAGTAAGAAAAGATTGTTACCTACTACAAAGGATCGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGGACTGTAGTCACTAAAACCATTGGTGACAATCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTTAATTCTCAATTCCCAAGGAGTTACTTCAGATGTACTAGAAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATAGAAGAGAATCCAGAAATGTACCAAATTACGTACATCGGATTTCATACATGCAAAGCCTCTTTACAGACTCCACAAATGGTCGCATTTTCTGCCGATACTAATTGGGACTCATTTCCTGTGAATCCTCATCATCACTCAAAGGAAATTGTAGTACATCAGGATTCTCCTATTATTACCTCAGAAAGGCCTATTGTGAAACAAGAATATCCGAACAATGACGACAATACTACTCAAATAAGTGATCTTACAGATAACTTATTGGATGATCAAAATTTGTGGTCTGATTTTAAGGATTTTGAACTCTCCAAACCTGCTGCTACTTTAAGCTTTAATAACGTGGCACCGTCTGATGATAATAATGCAGATAATGTGTATTCGTGTACTGAATCTCAAAATCTTGAAATTGATTTTGGGTTGTTTTCAGATTTCAGCAATGATTTAGTATATTTTGATGAAAGTAATTTACTTTAG 1026 0.348 MSIILHHESASSKMKELLIKELIQGKEYATQLKFMLNNHVDSDGSVSVKELVSNVLRTFSQTISVMNSSEACNFDEVAQNHLVNNNNSGEDGSLVAASCNDDVKSEDSSESKKRLLPTTKDRRGSYKRRKTDETRTVVTKTIGDNHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIEENPEMYQITYIGFHTCKASLQTPQMVAFSADTNWDSFPVNPHHHSKEIVVHQDSPIITSERPIVKQEYPNNDDNTTQISDLTDNLLDDQNLWSDFKDFELSKPAATLSFNNVAPSDDNNADNVYSCTESQNLEIDFGLFSDFSNDLVYFDESNLL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04341 341 SMART WRKY_cls 142 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04341 341 ProSiteProfiles WRKY domain profile. 137 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04341 341 Pfam WRKY DNA -binding domain 144 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04341 341 MobiDBLite consensus disorder prediction 100 132 - -
Trre6g04341 341 SUPERFAMILY WRKY DNA-binding domain 139 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04341 341 Gene3D WRKY domain 128 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04341 341 MobiDBLite consensus disorder prediction 103 132 - -
Trre6g04341 341 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 222 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04341 Trre-Chr6 46576546 46578822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04341 11 210 WRKY Transcription Factor Family AT3G56400 43.781 4.27e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g04341 WRKY 1.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04341 - - tpra:123913408 567.77