Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04340 ATGGAGAAGGAAAGAGAGAAAGAGTTGGTTGAATTGTACGAAACGGCGAAAAAAGCTGCCGATGCGTCTTCCGCCACCGATAGCAGCCCAAGCGAAGAATCCCGTTGCCTTGATGCTCTCGAACAGCTCAAGAAATTTCCGGTCAATTATAAAATTCTCGTCAATACTCAGGTGGGAAAGCATCTTAAAAGTCTCACCAAGCACCCCAGGCAGAAAATTCGGGCTTTTGCCATTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGTAAAAATAAGAACGGGGCCTCTGATTCTAAGGTCGAGTCAACAAATGGGGAGAGCGCTAAAGCTGGGAAATTGCAAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGTCAAGGTGGAGAAAACTAATGGGAATGGTACATCAAAGCTGAGCTCTGGAAATGTAAAGGTACAAAAAACGGATGTCAAAATTGAGAAAACTGATCGTACCTCAAGCATGAAGGTGGAAAAGATAGCAAAGGAAGAAAAACCAGTTTCTGTGGCCAAGACAAATTCATCCAGCGCTGCCGCTCCACCAAAGCTGAAGACTATGATCAAATCTAATGATTCAGTGCGAGACAGAATAAGGGAACTTCTTCGAGATGCTTTATCTAAGGTATTTGAAGAGGCAGATGAAGATATGATGGATGAAGTTAATACATGTGACCCTATTCGCGTTGCAGTGACAGTGGAGTCTGTGTTATTTGAAAAGTGGGGTGCTTCAAATGGAGCCCAAAAGGCTAAGTATAGGTCCTTAATATTTAATCTGAAGGATCAGAACAACCCAGATTTCCGAAGAAAAGTTCTGCTCGGTGTTGTGGAGCCACAGCGGCTGGTCAACATGAGCTCAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAGATTGAGAAAATTGAGCAGAAGGCTTTGTTTGAGTGTGAGCGTGGACAAGCACCAAATGCTACTACTGATCAATTTAAGTGTGGTCGGTGTGGTCAAAGGAAAACCACCTATTACCAAATGCAAACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1122 0.4323 MEKEREKELVELYETAKKAADASSATDSSPSEESRCLDALEQLKKFPVNYKILVNTQVGKHLKSLTKHPRQKIRAFAIDLIEIWKGIIIKETSKNKNGASDSKVESTNGESAKAGKLQKSPSVKVEKGESVKVEKTNGNGTSKLSSGNVKVQKTDVKIEKTDRTSSMKVEKIAKEEKPVSVAKTNSSSAAAPPKLKTMIKSNDSVRDRIRELLRDALSKVFEEADEDMMDEVNTCDPIRVAVTVESVLFEKWGASNGAQKAKYRSLIFNLKDQNNPDFRRKVLLGVVEPQRLVNMSSAEMASEQRKQEIEKIEQKALFECERGQAPNATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04340 373 Pfam Transcription factor S-II (TFIIS), central domain 202 319 IPR003618 GO:0006351
Trre6g04340 373 MobiDBLite consensus disorder prediction 134 148 - -
Trre6g04340 373 Coils Coil 295 315 - -
Trre6g04340 373 ProSiteProfiles TFIIS N-terminal domain profile. 14 91 IPR017923 -
Trre6g04340 373 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 30 103 IPR035441 -
Trre6g04340 373 SMART mid_6 203 311 IPR003618 GO:0006351
Trre6g04340 373 ProSiteProfiles Zinc finger TFIIS-type profile. 331 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Trre6g04340 373 SUPERFAMILY Zinc beta-ribbon 312 371 - -
Trre6g04340 373 SMART TFS2_5 12 90 IPR003617 GO:0005634
Trre6g04340 373 Gene3D - 180 301 IPR036575 GO:0006351
Trre6g04340 373 Gene3D - 302 373 - -
Trre6g04340 373 FunFam Probable Transcription elongation factor S-II 302 373 - -
Trre6g04340 373 Pfam Transcription factor S-II (TFIIS) 333 371 IPR001222 GO:0003676|GO:0006351|GO:0008270
Trre6g04340 373 ProSiteProfiles TFIIS central domain profile. 205 328 IPR003618 GO:0006351
Trre6g04340 373 MobiDBLite consensus disorder prediction 95 115 - -
Trre6g04340 373 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 373 - -
Trre6g04340 373 Pfam TFIIS helical bundle-like domain 39 88 IPR017923 -
Trre6g04340 373 NCBIfam transcription elongation factor S-II 16 373 IPR006289 GO:0003676|GO:0005634|GO:0006368
Trre6g04340 373 CDD Zn-ribbon_TFIIS 326 372 - -
Trre6g04340 373 ProSitePatterns Zinc finger TFIIS-type signature. 335 370 IPR001222 GO:0003676|GO:0006351|GO:0008270
Trre6g04340 373 MobiDBLite consensus disorder prediction 95 148 - -
Trre6g04340 373 PIRSF TFIIS 4 373 IPR035100 -
Trre6g04340 373 SUPERFAMILY Elongation factor TFIIS domain 2 190 303 IPR036575 GO:0006351
Trre6g04340 373 SMART Cys4_2 333 372 IPR001222 GO:0003676|GO:0006351|GO:0008270
Trre6g04340 373 CDD TFIIS_I 29 88 - -
Trre6g04340 373 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 103 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04340 Trre-Chr6 46552813 46561444 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre6g04340 TFIIS_M 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04340 K03145 - gmx:100811982 554.673