Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04325 ATGTATGATTTAGGACCTGCAAGATGTTATCGTCAGATCAAAAACAAGCCATACCCAAAATCACGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCCAGTGAAGCATTGGAAGCTGCACGTATTGCGTGCAACAAGTATATGTCGAAATTTGCTGGAAAGGATGCATTCCATTTGAGGGTTAGAGTACATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTCGGAAAGCCACTCGGTACTTGTGCTAGAGTTGCTATCGGTCAGGTTCTTCTTTCTGTCCGTTGTAAGGACACCAATAGCCATCATGCACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTTCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTGTTGATTACCTCAAGTACAAGTCAGAGAACAGGATTCTGCCTGATGGTGTGAATGCCAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCCGGAAGAGCTTTCATTGATGCTAGTACTCCTACTGCTTAG 675 0.4444 MYDLGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDTNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04325 224 SUPERFAMILY Ribosomal protein L16p/L10e 6 174 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 FunFam 60S ribosomal protein L10 3 207 - -
Trre6g04325 224 PANTHER 60S RIBOSOMAL PROTEIN L10 6 214 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 Pfam Ribosomal protein L16p/L10e 13 167 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 CDD Ribosomal_L16_L10e 42 167 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 NCBIfam 50S ribosomal protein L16 6 175 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 Gene3D Ribosomal protein L10e/L16 4 218 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre6g04325 224 ProSitePatterns Ribosomal protein L10e signature. 109 130 IPR018255 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04325 Trre-Chr6 46400688 46401703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04325 6 221 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.500 7.95e-143 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04325 K02866 - pvy:116105818 436.417