Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04324 ATGGGGAGAAGACCTGCAAGATGTTATCGTCAGATCAAAAACAAGCCATACCCAAAATCACGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGAATTTATGATGTTGGAATGAAGAAGAAAGGTGTTGATGAGTTTCCCTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAAAATGTTTCCAGTGAAGCATTGGAAGCTGCACGTATTGCGTGCAACAAGTATATGTCGAAATTTGCTGGAAAGGATGCATTCCATTTGAGGGTTAGAGTACATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTCGGAAAGCCACTCGGTACTTGTGCTAGAGTTGCTATCGGTCAGGTTCTTCTTTCTGTCCGTTGTAAGGACACCAATAGCCATCATGCACAGGAGGCCCTCCGTCGTGCTAAGTTTAAGTTTCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTGTTGATTACCTCAAGTACAAGTCAGAGAACAGGATTCTGCCTGATGGTGTGAATGCCAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCCGGAAGAGCTTTCATTGATGCTAGTACTCCTACTGCTTAG 672 0.4494 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDTNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04324 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 FunFam 60S ribosomal protein L10 1 206 - -
Trre6g04324 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Trre6g04324 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04324 Trre-Chr6 46400433 46401703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04324 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.727 4.71e-146 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04324 K02866 - pvy:116105818 444.506