Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04323 ATGATTCCTCGAACTTGTTCTCGTTTTCGTGCTAGTTCTGTGGAAGAGAACAGTTCTTCGAGGGATCGGGTTGAGGAATTGAGCTGTAATGAGGTCATTGGTGGTGGTGGTGGTGGTATGACGTTTTCGGAGGAGGCTCGTCGTGCTATGGCTGAGGAAAGAGTTCCTCTTGTGTCTTTGGCTGATGTTGTCGGTGGTGGTACGGATAGTTCTTATAACCATCCAAGGATTGATTTTCAATACATTGCTAAACTTGTTGAACAGATTCTTCCTTTTTCTCTGTTGTTGTTGATTGTTTTGATCAGGCAACATTTTCAAGGTTTCTTTGTTACAATCAGTTTATCAGCTGTGATGTTCAAGTCAAATGAACTTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAGTTTCTGTTCTTCTCGGTGTCTCTTTTTCCTTCATGCTGTATGTGATCTGCATTTACTGGTGGTATCAAAATGATGATATTCTATATCCTCTGGCCATGTTTCCGCCAGAATCAACACCGCCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGATATATTGGTGCGGCAAGCGGCAATGGCTTTCAAGTGTTTGTTGCTGGTATACTACAAAAATAGCAGATGCCATAATTTCCGTCGACAGGCTCAAATGTTAACTCTAGTTGAGTACACACTGCTGCTGTATCGTGCTTTCTTGCCAGCACCTGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCATCACTGATCACAGGATTGTATCTAACGTTCAAGCTAACATCTTCAGTTGAGAAGATCCAGTGCTTAATTTGTGCTTTACAAGCGTTGTCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACAGAACAGGTAAATGCTGCTGGTGATCTGTGCGCTATATGCCAAGAGAAGATGCATGCTCCTATCCTGTTGTGCTGTAAACATATGTTCTGCGAGGAGTGTGTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACATTGGTAAAACCTTATGATCTGCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTATCAGTTGTTTTGA 1107 0.4164 MIPRTCSRFRASSVEENSSSRDRVEELSCNEVIGGGGGGMTFSEEARRAMAEERVPLVSLADVVGGGTDSSYNHPRIDFQYIAKLVEQILPFSLLLLIVLIRQHFQGFFVTISLSAVMFKSNELVKKQTALKGDQKVSVLLGVSFSFMLYVICIYWWYQNDDILYPLAMFPPESTPPFWHAIFIILVNDILVRQAAMAFKCLLLVYYKNSRCHNFRRQAQMLTLVEYTLLLYRAFLPAPVWYRFFFNKDFGSLFSSLITGLYLTFKLTSSVEKIQCLICALQALSKKEVHYGVYATTEQVNAAGDLCAICQEKMHAPILLCCKHMFCEECVSEWFEREWTCPLCRTLVKPYDLRTFGDGSTSLFYQLF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04323 368 ProSiteProfiles Zinc finger RING-type profile. 307 345 IPR001841 -
Trre6g04323 368 SMART ring_2 307 344 IPR001841 -
Trre6g04323 368 Pfam Zinc finger, C3HC4 type (RING finger) 305 348 - -
Trre6g04323 368 ProSitePatterns Zinc finger RING-type signature. 322 331 IPR017907 -
Trre6g04323 368 SUPERFAMILY RING/U-box 305 354 - -
Trre6g04323 368 CDD RING-HC_RNFT1-like 305 345 - -
Trre6g04323 368 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 65 368 IPR044235 GO:0061630|GO:1904294
Trre6g04323 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04323 Trre-Chr6 46389850 46395779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04323 51 368 C3H Transcription Factor Family AT5G01960 68.847 3.37e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04323 - K22379 gmx:100784614 537.724