Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04321 ATGGAAGCGTTGGTGTGCAGAAAATTGGGTGACCCAACGGTGAGCGTGGAAGAAGCCAACAGCCCAATAATTGTATCCAAGAATCACCCAATCCCTCAATTGAATTCTCCTACAGCGGTGAGAGTTAGAGTCAAAGCAACAAGCTTGAATTTCGCTAATTACTTGCAGATTCTTGGCAAGTATCAGGAGAAACCCCCTTTGCCATTCATTCCTGGATCTGATTTTTCCGGCATCGTTGATTCCGTTGGTTCCAATGTTACCAATTTTCGTGTTGGAGACCCTGTTTGTTCCTTTGCTGCTCTTGGTTCTTATGCTCAGTATATAGTTGTTGATCAGAACGAATTGTTTCGTGTGCCGCAAGGTTGCGATTTGGTTGCTGCTGGAGCACTTGCTGTGGCATTTGGCACTTCACATGTTGCACTTGTTCATAGAGCTCGGTTGACATCTGGTCAGGTATTGTTGGTTTTGGGTGCAGCAGGAGGTGTGGGTCTTGCAGCTGTGCAAATCGGAAAAGCATGCGGAGCCGTTGTCATTGCTGTTGCTAGAGGAGCTGAAAAGGTGCAGCTCTTGAAATCACTTGGTGTGGATCATGTGGTGGACTTGGGTAATGAAAATGTCACCGAGAGTGTCAAAGAGTTCCTTAAGGTCAGAAGGCTTAAAGGGGTCGATGTCCTGTATGACCCAGTTGGAGGCAAGCTTAACAAAGAATCTTTACGGCTTCTGAAATGGGGAGCTAACATTCTAATAATTGGGTTTGCAAGTGGAGAAGTTCCTGTCATCCCTGCTAACATAGCTCTTGTTAAGAATTGGACAGTACATGGCCTGTATTGGGGTAGTTATAAAATACACCGCCCAGTTGTTCTTGAAGACTCTCTGAAGGAGCTACTGTCTTGGTTGGCAAAAGGCTTGATTTCTGTTCATATTTCTCATTCTTACAGCCTGTCAGAGGCCAACCTTGCCTTCTCTGCCATAAGAGATAGGAAAGCCATAGGGAAGGTGATGATTGTATTCGATGAGAAAAGTACAAGATCTAAGCTGTGA 1041 0.4515 MEALVCRKLGDPTVSVEEANSPIIVSKNHPIPQLNSPTAVRVRVKATSLNFANYLQILGKYQEKPPLPFIPGSDFSGIVDSVGSNVTNFRVGDPVCSFAALGSYAQYIVVDQNELFRVPQGCDLVAAGALAVAFGTSHVALVHRARLTSGQVLLVLGAAGGVGLAAVQIGKACGAVVIAVARGAEKVQLLKSLGVDHVVDLGNENVTESVKEFLKVRRLKGVDVLYDPVGGKLNKESLRLLKWGANILIIGFASGEVPVIPANIALVKNWTVHGLYWGSYKIHRPVVLEDSLKELLSWLAKGLISVHISHSYSLSEANLAFSAIRDRKAIGKVMIVFDEKSTRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04321 346 SMART PKS_ER_names_mod 32 335 IPR020843 GO:0016491
Trre6g04321 346 SUPERFAMILY GroES-like 17 154 IPR011032 -
Trre6g04321 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Trre6g04321 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 288 IPR036291 -
Trre6g04321 346 Gene3D - 133 280 - -
Trre6g04321 346 CDD QOR1 1 335 - -
Trre6g04321 346 Gene3D - 34 331 - -
Trre6g04321 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Trre6g04321 346 Pfam Zinc-binding dehydrogenase 161 300 IPR013149 -
Trre6g04321 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04321 Trre-Chr6 46347158 46350556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04321 68 266 Monolignol Biosynthesis Gene Families AT1G72680 25.424 3.52e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04321 K00344 - gmx:100817700 588.956