Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04312 ATGGAGACTCTGAAAGGTGCAATTCCAAATGAACTAAAACAAGCAATTAGGGATAGCAATGTAGAAGATACTCTTCGCGACACTTGTTCTTCTCTTCATCAATTCTTTCTTCATTTTCAACCATTTCACCAGATTGTGACTGAACTTGCGGACCCAAGCTATGCACTGTGCGGTAAGAGTAAAGAAGCTGCTTTGGAATATAAGCAGCTTGGTAATCAATGTTTCTCTGATGCTGATTATGTTAAGGCTCTCGATTATTATACTCAGGCATTGCGTAGGGCTCCTTTTGAAATTGGTGACATGAAAACTAATCTGGTTGCAACATTGTATATCAATCGAGCTACTGTATTGCATAAAATGAATCTTTTAGTAGAATGTTTGCGAGACTGCAATCGAGCTCTTCAGATATGTCCAAGCTATGCAAAGGCATGGTATAGAAGAGGAAAGGCAAATGTTTCATTGGGAAATAATAGAGATGCGATCTATGACTTAAATATAGCTAAGAGTGTCGAATCGTCAACCGGTGGGAAGAGACAAGTAGAAAGTGAGCTGAAAATTATTTTAGACCAATCCAAGAACACAAATATAGCAGTACAGACGCAACATAAGGAGAACAGCTTGAGTACAGTGGGTGAGTTGCCTCAAATAAAGCTGCGAAGTGTCTCCATGCCTGATAAAGGAAGAGGCATGGTGCCGCCACATGATGTTTCACCAGGTTCGTTGGTTCATGCTGAAGAACCTTATGCTACAATAATATTAAAGCAATGTCGGGAAACTCATTGCCATTATTGCTTTAATGACCTACCTGCTGATAGAGTTCCTTGTATATCATGTTCAATACCATTGTACTGCTCCCAGCAATGCCAGATAAAGGCAGGCGGGGAAATGTTCAGGATTTCCACAGAAGATAGTAATATTCATAAAAACTTACCCGGCGATATTGGAAAATATGCTGCTGAAGTGATTCAATACAATGATTGTGAACAAAAGATTGATGATGTTACTGAACATAAACATGAATGTCAAGGGGTACATTGGCCTGCTGTACTGCCTTCTGAGATAGTTTTGGCCGGCAGAGTTCTAGCAAAGTTTTTGTCGAAGAGTTTGTCTGGAGATATCGCAAGTTTTGTGGAAAAGCTGGAACTTTCTCATTGTTACGAACATATGCCATTTGAAAGTAAATTAGATTCACATATATACGCCATTGTATTGTTATATTGTCTTAAACACTCTTATGGAACTATGGTTTCCATCAACGGAATCTCTATATCACAGGTTGTCATAGTTATATCTCAGATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGATGCTCATGGACTGTCAGATCAATCTGGAGGATTTCCATTTCATTCCAATGTACATTTAACTAGTAATGTGGAACAGGTCAGGGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCTTGCCAACCAAATGTTCATGCATATTTTCTTTCACGCACACTCTATTTACGAACAACAAAAGTTGTAGCAGCTGGGTGTGAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGCCAAAATTTTCTCAAAGATGAATACGCATTTCATTGTAAATGTACTGGTTGTTCAGAAGTTAATCTATCTGACATTGTCCTCAACGCTTTTCATTGTGTCAAACCAAATTGTTCCGGCGCAGTGTTGGAAAGCAGAGTACTTGAGTGTGAAAAGCAGAAAATCAAACACTTCCCTATTGCTAACAAAGTTATCAAGAAGGATGACATCTATGAAGTTTGTCTTCACGCATTTAACCAAAATGACACCTCTATTCATATTCAACCTGGATACTGTTTGAAATGTGGTTCTTATTGTGATCTGGAGGCTTCACGAGCCACAGTTGATAAAGCCTTAATATCCATAAACATTGTTATCAGAATCGGGATTAAAATCGTAAAATCCATGGATTTTGCGATTTTAATCAGCCTTAAGGATTTGGATTTTGAGTAG 2028 0.3826 METLKGAIPNELKQAIRDSNVEDTLRDTCSSLHQFFLHFQPFHQIVTELADPSYALCGKSKEAALEYKQLGNQCFSDADYVKALDYYTQALRRAPFEIGDMKTNLVATLYINRATVLHKMNLLVECLRDCNRALQICPSYAKAWYRRGKANVSLGNNRDAIYDLNIAKSVESSTGGKRQVESELKIILDQSKNTNIAVQTQHKENSLSTVGELPQIKLRSVSMPDKGRGMVPPHDVSPGSLVHAEEPYATIILKQCRETHCHYCFNDLPADRVPCISCSIPLYCSQQCQIKAGGEMFRISTEDSNIHKNLPGDIGKYAAEVIQYNDCEQKIDDVTEHKHECQGVHWPAVLPSEIVLAGRVLAKFLSKSLSGDIASFVEKLELSHCYEHMPFESKLDSHIYAIVLLYCLKHSYGTMVSINGISISQVVIVISQIKVNCMTVVRLKSIDAHGLSDQSGGFPFHSNVHLTSNVEQVRVGKAIYKAGSLFNHSCQPNVHAYFLSRTLYLRTTKVVAAGCELELSYGPQVGLWDCKDRQNFLKDEYAFHCKCTGCSEVNLSDIVLNAFHCVKPNCSGAVLESRVLECEKQKIKHFPIANKVIKKDDIYEVCLHAFNQNDTSIHIQPGYCLKCGSYCDLEASRATVDKALISINIVIRIGIKIVKSMDFAILISLKDLDFE 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04312 675 SUPERFAMILY TPR-like 60 171 IPR011990 GO:0005515
Trre6g04312 675 Gene3D Tetratricopeptide repeat domain 39 204 IPR011990 GO:0005515
Trre6g04312 675 ProSiteProfiles SET domain profile. 292 522 IPR001214 GO:0005515
Trre6g04312 675 Gene3D SET domain 229 259 IPR046341 -
Trre6g04312 675 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 648 - -
Trre6g04312 675 ProSiteProfiles TPR repeat profile. 64 97 IPR019734 GO:0005515
Trre6g04312 675 SMART tpr_5 64 97 IPR019734 GO:0005515
Trre6g04312 675 SMART tpr_5 107 140 IPR019734 GO:0005515
Trre6g04312 675 SMART tpr_5 141 174 IPR019734 GO:0005515
Trre6g04312 675 Gene3D - 326 348 - -
Trre6g04312 675 Gene3D - 260 292 - -
Trre6g04312 675 SUPERFAMILY SET domain 209 552 IPR046341 -
Trre6g04312 675 Gene3D SET domain 438 550 IPR046341 -
Trre6g04312 675 Pfam SET domain 463 522 IPR001214 GO:0005515
Trre6g04312 675 Gene3D - 349 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04312 Trre-Chr6 46260320 46266754 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g04312 SET 6.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04312 K24634 - gmx:100783548 1003.05