Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04311 ATGGCACCCCCTGCAGGCAGACCAAAAAAGGTTGTGCAAATGGAAGAAGAAGATGGTCATGATGATAATGAGATGATGAAAAATGTAGTGAGAGCTGTGCCATTTTTTAAACTATTGAGCTATGCTGACTATGTGGATTGGATTCTTATGGGTTTAGGAACATTAGGTTCCATTGTGCATGGCATGGCACTTCCTGTTGGATATTTGTTGTTAGGAAAAGCTCTTAATGCTTTTGGTAACAATATTCATGACATTAATGCTATGGTTCCTGCTCTTAAAAAGGTTATTCCATTTGTGTGGTACATGGCTATTGCCACATTTCCTGCTGGGGTACTTGAGATTGGTTGTTGGATGTATGCAAGTGAAAGACAGTTATCACGCCTGAGATTAGCATATCTAAAAGCAGTCTTAAACCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTAATCACTGGAATAAGCAAGCACATGAGTGTAATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACTTCTAGCTGTGCAACTTTCTTTGCTGGAATCGTGATCGCCGCGATATGCTGTTGGGAAGTGGCACTTCTATGTTTAGTTGTTGTCCCTCTTATTCTTATTATTGGAGCAACTTACACTAAGAAAATGAACAAAATCTCAACTACTAAATTGTTTTACCATTCTGAAGCCACATCGATGATAGAGCAGACAATATCACAAATAAAAACAGTATATGCTTTTGTTGGAGAGGGATTGGCAATAAAATCCTTCACAGAGAACATGGAAAATCAGTATGTCATAAGCAAAGGGGAGGCAATTGTGAAGGGAGTTGGAACAGGAATGTTTCAAACTGTGAGTTTTTGTTCTTGGTCTCTTATTATATGGGTTGGAGCTGTTGTCGTCAGAGCCGGGAGAGCTAAGGGAGGAGATATAATAGCTGCAGTAATGAGTATTCTTTTTGGTGCCATATCTATCACTTATGCAGCGCCAGACATGCAAATATTCAATCAGGCGAAAGCTGCCGGGTATGAGGTCTTCGAAGTGATCCAAAGAAAGCCACTAATACACAATGAATCAAAAGGGGAGATGCCTAGTAAGATTAATGGTTACATTGAGCTCCGAAATGTTTGCTTTTCATACCCATCACGGCCGGAGAAACCTATCCTTCAAGGACTGTCATTGTCCATACCAGCAGGAAAGACAGTAGCTCTAGTTGGTAGCAGCGGCTGCGGAAAGAGTACTGTTATTTCCCTCATAACTAGGTTTTATGACCCCGTGCGAGGAGAAATTTTTATTGACAGTCACAATATCAAGGACCTCGATCTGAAGTTCCTTCGAAGTAATATAGGGGCCGTTTACCAAGAGCCATCACTCTTCACAGGCACGATCAAGGACAACTTGAAACTGGGAAAGATGGACGCGGATGATGAAGAGATTCAAAAGGCAGCAGTGATGTCCAATGCGCACTCTTTCATATCACAGCTTCCTAATCAATACCTAACTGAGGTAGGACAAAGGGGAGTTCAAGTATCAGGTGGTCAGAAACAAAGAATTGCAATTGCAAGAGCCATTCTAAAAAATCCTCCTATTCTTTTGCTTGACGAGGCCACTAGTGCCCTTGATTCAGAGTCGGAAAAGCTGGTTCAAGAAGCACTTGATACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTCTCAACAGTTGTAAATGCAGATATGATTGCTGTAGTGGAGAATGGACAAATTGTAGAGACAGGAACACACCAGAGTTTGTTAGACACGAGTAAATTCTATAGTACATTATTCAGCATGCAGAACCTTGAATCATCTCCTGAACTAAGAACTACAGTTTCCAAAAATAAAAGTGCCCACCAAGAAGCCAGTATTGATGAAACAAGACCATTACCAGATGAAGAGAGAGAGGTTCAAAGAGATCTCACAGTCACGGAGCCTTCGGTACTCAGAGAACAGAACAAGATGAGCATAAGAGAAGAAAATATATTTTTCAGAATTTGGTTCGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCGTTTTTCGGATTCTACATCATCACAATTGGAGTAGCATACTTCGAAGAAGATGCAAAACGAAAAGTTGGAATGTACTCGGCCATCTTCTCTGGAATAGGGTTGCTTTCACTATTTAGCCACACCTTCCAGCATTACTCCTTTGGAGTGGTTGGAGAAAAGGCCATGTCAAATTTCAGACTTGCTCTATATTCAGGTGTGCTTAGTAACGAAGTAGGCTGGTTTGACAAACCTGAGAACACTGTCGGCTCATTAACATCACGCATCATCAGTGATACTGCCATGGTCAAAATCATAATTGCTGATCGCATGTCTGTGATTGTGCAATGTGTTTCCTCCATATTTATAGCAACAGTTGTTAGCATGTATGTCAACTGGAGAATGGGTTTGGTAGCATGGGCTGTGATGCCTTGCCATTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGCGACTATTCTGCTACACATTCAGACCTTGTTGCTCTTGCGTCTGAGTCCACGACCAACATAAGAACTATTGCATCATTTTGTCATGAAGAACAAGTACTGAAGAAAGCCAAAATGTATTTGGACATTCCAAAGAAAAAGTACAGGAAAGAAAGTATCAAATACGGCATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACACGCGGTTGCTTTGTGGTACACGACAATTCTCGTTGACAGACGTCAAGCCACCTTTGAAAATGGAATAAGAGCATACCAAATTTTTTCACTCACAGTTCCTTCTATCACAGAACTATACACACTGATCCCAACTGTCATCACTGCCATCAATATGCTTACCCCAGCATTCAAAACCTTTGACCGTAAAACTGAAATTGAACCAGATATACCGGATGATTCCCAACCCGAGAGGATCCAAGGAAACGTCGAATTTGAAAATGTAAATTTCAAGTACCCTTTAAGACCTGAGGTGACTGTTCTTGAAAATTTCAGTTTACAAATTGAAGCCGGATCTAAGGTCGCTTTTGTAGGACCAAGTGGTGCTGGAAAATCATCTGTGTTGGCCCTTTTACTGAGATTTTATGATCCAGTGGTGGGAAAAGTATTAATTGATGGGAAAGACTTGAAGGAATATAATCTAAGATGGTTAAGGACACAGATAGGACTGGTACAACAAGAGCCACTGCTTTTTAACTGCTCAATTAGAGACAATATTTGCTATGGCAATAAAGCGGCTTCTGAAAGTGAAATTGTGGAGGTTTCAAGAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATGACACTGTTGTTGGAGAGAAAGGTTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCAGCAATCTTACTCCTTGATGAAGCAACGAGTGCCCTCGACGCTGAGTCCGAAAGAACTATAGTAAATGCAATTAAAGCAATGAATCTGAAGGAAGAAAGTGGTTTGTGTTCAAGAATCACTCAGATCACAGTAGCTCATAGACTTTCAACAGTCAGAAACTCGGATACCATAATCGTCATGGAAAAAGGTAGAATTGTAGAGACGGGTTCCCACTCAACCCTAATATCAGTGGATGCAGGACTTTATTCAAGATTATTCAGACTACAGAGCTTTGACGAAACCTCATAG 3783 0.4097 MAPPAGRPKKVVQMEEEDGHDDNEMMKNVVRAVPFFKLLSYADYVDWILMGLGTLGSIVHGMALPVGYLLLGKALNAFGNNIHDINAMVPALKKVIPFVWYMAIATFPAGVLEIGCWMYASERQLSRLRLAYLKAVLNQEIGAFDTELTSGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIAAICCWEVALLCLVVVPLILIIGATYTKKMNKISTTKLFYHSEATSMIEQTISQIKTVYAFVGEGLAIKSFTENMENQYVISKGEAIVKGVGTGMFQTVSFCSWSLIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISITYAAPDMQIFNQAKAAGYEVFEVIQRKPLIHNESKGEMPSKINGYIELRNVCFSYPSRPEKPILQGLSLSIPAGKTVALVGSSGCGKSTVISLITRFYDPVRGEIFIDSHNIKDLDLKFLRSNIGAVYQEPSLFTGTIKDNLKLGKMDADDEEIQKAAVMSNAHSFISQLPNQYLTEVGQRGVQVSGGQKQRIAIARAILKNPPILLLDEATSALDSESEKLVQEALDTAMQGRTVILIAHRLSTVVNADMIAVVENGQIVETGTHQSLLDTSKFYSTLFSMQNLESSPELRTTVSKNKSAHQEASIDETRPLPDEEREVQRDLTVTEPSVLREQNKMSIREENIFFRIWFDLKKKELVKIAIGSFAAAFSGISKPFFGFYIITIGVAYFEEDAKRKVGMYSAIFSGIGLLSLFSHTFQHYSFGVVGEKAMSNFRLALYSGVLSNEVGWFDKPENTVGSLTSRIISDTAMVKIIIADRMSVIVQCVSSIFIATVVSMYVNWRMGLVAWAVMPCHFIGGLIQAKSAKGFSGDYSATHSDLVALASESTTNIRTIASFCHEEQVLKKAKMYLDIPKKKYRKESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQATFENGIRAYQIFSLTVPSITELYTLIPTVITAINMLTPAFKTFDRKTEIEPDIPDDSQPERIQGNVEFENVNFKYPLRPEVTVLENFSLQIEAGSKVAFVGPSGAGKSSVLALLLRFYDPVVGKVLIDGKDLKEYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNKAASESEIVEVSREANIHEFVSNLPNGYDTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERTIVNAIKAMNLKEESGLCSRITQITVAHRLSTVRNSDTIIVMEKGRIVETGSHSTLISVDAGLYSRLFRLQSFDETS 1260
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04311 1260 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g04311 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1252 IPR003439 GO:0005524
Trre6g04311 1260 Gene3D ABC transporter type 1, transmembrane domain 37 631 IPR036640 GO:0005524|GO:0016020
Trre6g04311 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 610 IPR027417 -
Trre6g04311 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1254 IPR027417 -
Trre6g04311 1260 SUPERFAMILY ABC transporter transmembrane region 681 994 IPR036640 GO:0005524|GO:0016020
Trre6g04311 1260 Gene3D ABC transporter type 1, transmembrane domain 673 971 IPR036640 GO:0005524|GO:0016020
Trre6g04311 1260 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Trre6g04311 1260 FunFam ABC transporter B family member 1 998 1255 - -
Trre6g04311 1260 Gene3D - 998 1259 IPR027417 -
Trre6g04311 1260 Pfam ABC transporter 391 540 IPR003439 GO:0005524
Trre6g04311 1260 SUPERFAMILY ABC transporter transmembrane region 37 355 IPR036640 GO:0005524|GO:0016020
Trre6g04311 1260 Pfam ABC transporter transmembrane region 690 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g04311 1260 Pfam ABC transporter transmembrane region 51 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g04311 1260 PANTHER ABC TRANSPORTER B FAMILY 12 741 IPR039421 -
Trre6g04311 1260 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Trre6g04311 1260 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Trre6g04311 1260 FunFam ABC transporter B family member 4 363 617 - -
Trre6g04311 1260 CDD ABC_MTABC3_MDL1_MDL2 373 610 - -
Trre6g04311 1260 MobiDBLite consensus disorder prediction 617 647 - -
Trre6g04311 1260 CDD ABC_MTABC3_MDL1_MDL2 1008 1254 - -
Trre6g04311 1260 MobiDBLite consensus disorder prediction 629 647 - -
Trre6g04311 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g04311 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 689 973 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre6g04311 1260 SMART AAA_5 400 592 IPR003593 GO:0016887
Trre6g04311 1260 SMART AAA_5 1035 1229 IPR003593 GO:0016887
Trre6g04311 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 682 991 - -
Trre6g04311 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Trre6g04311 1260 Gene3D - 363 611 IPR027417 -
Trre6g04311 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre6g04311 Trre-Chr6 46243775 46250432 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04311 2 1259 Calmodulin-binding Proteins AT2G36910 40.217 0.0 946