Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04297 ATGAAGACCATCCTTTCTTCCGAAACCATGGATATCCCTGACGGCGTTAGCATCAAGGTTAACGCTAAGGTGATCGAAGTTGAAGGTCCTCGTGGCAAGCTTGTTCGTGATTTCAAGCATCTCAACCTTGATTTTGATCTCATCACTGATGAGAATGGAAAGAAAAAGCTGAAGATCGATGCCTGGTTTGGTTCCCGGAAAACCTCCGCCGCCATCCGTACTGCTCTCAGTCACGTTGAGAATCTGATCAGAGGTGTCACCAAGGGTTTCCGTTACAAGATGAGGTTTGTGTATGCTCATTTTCCTATCAATGCTAGCATCACCAATGACAACAAGTCCATTGAGATCCGTAACTTTTTGGGTGAAAAGAAGGTGAGGAAAGTTGATTTGCTTGATGGAGTTTCGATTGTTCGGTCTGAGAAGGTGAAGGATGAGGTTGTTTTGGATGGAAATGACATTGAACTTGTTTCAAGGTCATGTGCCCTTATTAACCAGAAATGCCATGTCAAGAACAAGGATATCAGGAAGTTTCTTGATGGTATTTACGTCAGTGAGAAGGGCTCCGTAGTGACTGAAGAATAG 582 0.4381 MKTILSSETMDIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFGSRKTSAAIRTALSHVENLIRGVTKGFRYKMRFVYAHFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIVRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGSVVTEE 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04297 193 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 191 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 SUPERFAMILY Ribosomal protein L6 90 186 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 Gene3D - 90 193 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 189 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 Pfam Ribosomal protein L6 101 180 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 Gene3D - 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 FunFam 60S ribosomal protein L9 90 193 - -
Trre6g04297 193 FunFam 60S ribosomal protein L9 1 89 - -
Trre6g04297 193 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Trre6g04297 193 ProSitePatterns Ribosomal protein L6 signature 2. 165 186 IPR002359 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04297 Trre-Chr6 46137737 46138898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04297 1 193 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 87.113 3.52e-122 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04297 K02940 - jre:108996599 353.984