Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04294 ATGGGTTCTCTTGAGTGTGTTCCATCGCTTGATCATGGGATGGCGGTGTTACCTTTAAATTCGCTTCCGTTAGGGTTTCGATTTCGACCTTCCGATGAAGAACTTGTTGATTACTATCTACGTTCTAAGATCAATGGAAATGGTGATGAGGTTTGGGTTATACGAGAAATTGATATCTGCAAATGGGAACCATGGGATATGCCTGGTTTGTCGGTGATACGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGAAAGTATCCAAACGGGCATAGGTTGAACAGAGCGACAACTCATGGGTATTGGAAGGCAACGGGAAAGGATCGTAGAATCAAGTCTGGAAACATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCGCGCACCTAAAGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACCCTGAAGGAGCTTGATGGTACCAACCCGGGACAGAATCCATATGTCCTCTGTCGGTTATTTAAGAAAAATGATGAGAGCCTTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAGCTACTTCAGCTCCTCTGGCTGCCAATTACTCTCCTGAAGAAATACAATCTGATCCAGCTCCTATTACGGCATCCACATCACAGGTCACAGAAGAGGATAAACAGCTGCCCTTTATCCCCGATGTCTCTGAGGAAACCATATCTAATGTTATAACGTCGGTCGATTGCCATAGTGATGGATATGATGCTCATGATGCCCAAAATCAAATTGTTAAACTAGCTGCGGAGGAGGATCAGGCGTCAATCTTGGACATGTATTATAACCCGAAAGACGGTCTATTATTAGATGACAGATTATTCTCCCCAGTTTTGGCGCACATGCCACAAGAATTTAATTATCAAGCAAACAATGAATCAGATGGTCAATGTGGGCTTCAGTATGGTACAAATGAGATAAACATTTCGGACTTTTTAAATTATAATCTTAATTGGGATCAACTTCCTTGTGCGGAGTTCAGTAGTCACCAGCAGAACTTCTCCTTGTTTAATGTTAAAGACAATGGCTCTGGAAGTGAATCAGAAGCGGGCTCCAATATGACTTGTATGCAAGCTGCTTATCCTCAAGAAGCAATTGACAGAAGGTTTCCTTTTGCGACAACACCATCAATTAGCACCTTTGACCATAGTGGTGATGATCAAAAGAGCAATGTTGTACCATTGCAAAACAATTTCCAGACATCTTATTCATCGGATGTTAATTTTGGTGAAGTGTGCAATGTTGTCAATGGTTATGATCAACCAAGTAACAGAATTCATATGCAAGGTAATGCTCAAAGTGGTTATAATAATACAGTTATGCCTGCTGAAAGTGGAATCATTAGAAGGGCCAGGCCGGCACGGGACGAACAATTTAAAACAAATCATATGCAAGGTAATGCTCAAAGGAGAATTCGTTTGAAGGTTGAACATGTCGCAAATGGGAATACACAAGAACAGCATAATTCAAAACCAAGCATTGCAGTGGAGAAGAAAGCTGCAGAAAATCATGCTGCCGATGCTGAAAGTGCTACTCGTACTAATCATGCGTCTAAACAGCGGAAGGCATCCAAGTCAATTGACAATAGAAAGATTTCTCAGAAAGTTGCAAATGGAGGGGGGCTAAGAGACTTTTTATCTGTAGGAAGGGTGCCTTTCAGATCAAAGACTTCCTCAAACCGTGCCGCCTTGTGGTCTTCGGTTTTTGTAGTTTCTGCATCTGTACTGGTTTCATTAGTAGCCTTTACTAACATATGGGAATATATTAAATTTTGA 1812 0.4178 MGSLECVPSLDHGMAVLPLNSLPLGFRFRPSDEELVDYYLRSKINGNGDEVWVIREIDICKWEPWDMPGLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGNILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESLEVSNCGEVEQATSAPLAANYSPEEIQSDPAPITASTSQVTEEDKQLPFIPDVSEETISNVITSVDCHSDGYDAHDAQNQIVKLAAEEDQASILDMYYNPKDGLLLDDRLFSPVLAHMPQEFNYQANNESDGQCGLQYGTNEINISDFLNYNLNWDQLPCAEFSSHQQNFSLFNVKDNGSGSESEAGSNMTCMQAAYPQEAIDRRFPFATTPSISTFDHSGDDQKSNVVPLQNNFQTSYSSDVNFGEVCNVVNGYDQPSNRIHMQGNAQSGYNNTVMPAESGIIRRARPARDEQFKTNHMQGNAQRRIRLKVEHVANGNTQEQHNSKPSIAVEKKAAENHAADAESATRTNHASKQRKASKSIDNRKISQKVANGGGLRDFLSVGRVPFRSKTSSNRAALWSSVFVVSASVLVSLVAFTNIWEYIKF 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04294 603 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 271 - -
Trre6g04294 603 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Trre6g04294 603 MobiDBLite consensus disorder prediction 511 545 - -
Trre6g04294 603 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Trre6g04294 603 FunFam Nac domain-containing protein 86 31 175 - -
Trre6g04294 603 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Trre6g04294 603 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04294 Trre-Chr6 46121371 46124128 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04294 5 213 NAC Transcription Factor Family AT1G33060 61.905 2.87e-90 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04294 NAM 5.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04294 - - gmx:100777071 678.707