Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04293 ATGGGTTCTCTTGAGTGTGTTCCATCGCTTGATCATGGGATGGCGGTGTTACCTTTAAATTCGCTTCCGTTAGGGTTTCGATTTCGACCTTCCGATGAAGAACTTGTTGATTACTATCTACGTTCTAAGATCAATGGAAATGGTGATGAGGTTTGGGTTATACGAGAAATTGATATCTGCAAATGGGAACCATGGGATATGCCTGGTTTGTCGGTGATACGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGATCGAAAGTATCCAAACGGGCATAGGTTGAACAGAGCGACAACTCATGGGTATTGGAAGGCAACGGGAAAGGATCGTAGAATCAAGTCTGGAAACATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCGCGCACCTAAAGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACCCTGAAGGAGCTTGATGGTACCAACCCGGGACAGAATCCATATGTCCTCTGTCGGTTATTTAAGAAAAATGATGAGAGCCTTGAAGTTTCAAACTGTGGTGAAGTGGAGCAAGCTACTTCAGCTCCTCTGGCTGCCAATTACTCTCCTGAAGAAATACAATCTGATCCAGCTCCTATTACGGCATCCACATCACAGGTCACAGAAGAGGATAAACAGCTGCCCTTTATCCCCGATGTCTCTGAGGAAACCATATCTAATGTTATAACGTCGGTCGATTGCCATAGTGATGGATATGATGCTCATGATGCCCAAAATCAAATTGTTAAACTAGCTGCGGAGGAGGATCAGGCGTCAATCTTGGACATGTATTATAACCCGAAAGACGGTCTATTATTAGATGACAGATTATTCTCCCCAGTTTTGGCGCACATGCCACAAGAATTTAATTATCAAGCAAACAATGAATCAGATGGTCAATGTGGGCTTCAGTATGGTACAAATGAGATAAACATTTCGGACTTTTTAAATTATAATCTTAATTGGGATCAACTTCCTTGTGCGGAGTTCAGTAGTCACCAGCAGAACTTCTCCTTGTTTAATGTTAAAGACAATGGCTCTGGAAGTGAATCAGAAGCGGGCTCCAATATGACTTGTATGCAAGCTGCTTATCCTCAAGAAGCAATTGACAGAAGGTTTCCTTTTGCGACAACACCATCAATTAGCACCTTTGACCATAGTGGTGATGATCAAAAGAGCAATGTTGTACCATTGCAAAACAATTTCCAGACATCTTATTCATCGGATGTTAATTTTGGTGAAGTGTGCAATGTTGTCAATGGTTATGATCAACCAAGTAACAGAATTCATATGCAAGGTAATGCTCAAAGGAGAATTCGTTTGAAGGTTGAACATGTCGCAAATGGGAATACACAAGAACAGCATAATTCAAAACCAAGCATTGCAGTGGAGAAGAAAGCTGCAGAAAATCATGCTGCCGATGCTGAAAGTGCTACTCGTACTAATCATGCGTCTAAACAGCGGAAGGCATCCAAGTCAATTGACAATAGAAAGATTTCTCAGAAAGTTGCAAATGGAGGGGGGCTAAGAGACTTTTTATCTGTAGGAAGGGTGCCTTTCAGATCAAAGACTTCCTCAAACCGTGCCGCCTTGTGGTCTTCGGTTTTTGTAGTTTCTGCATCTGTACTGGTTTCATTAGTAGCCTTTACTAACATATGGGAATATATTAAATTTTGA 1704 0.4184 MGSLECVPSLDHGMAVLPLNSLPLGFRFRPSDEELVDYYLRSKINGNGDEVWVIREIDICKWEPWDMPGLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATTHGYWKATGKDRRIKSGNILIGMKKTLVFYSGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKNDESLEVSNCGEVEQATSAPLAANYSPEEIQSDPAPITASTSQVTEEDKQLPFIPDVSEETISNVITSVDCHSDGYDAHDAQNQIVKLAAEEDQASILDMYYNPKDGLLLDDRLFSPVLAHMPQEFNYQANNESDGQCGLQYGTNEINISDFLNYNLNWDQLPCAEFSSHQQNFSLFNVKDNGSGSESEAGSNMTCMQAAYPQEAIDRRFPFATTPSISTFDHSGDDQKSNVVPLQNNFQTSYSSDVNFGEVCNVVNGYDQPSNRIHMQGNAQRRIRLKVEHVANGNTQEQHNSKPSIAVEKKAAENHAADAESATRTNHASKQRKASKSIDNRKISQKVANGGGLRDFLSVGRVPFRSKTSSNRAALWSSVFVVSASVLVSLVAFTNIWEYIKF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04293 567 MobiDBLite consensus disorder prediction 475 507 - -
Trre6g04293 567 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Trre6g04293 567 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Trre6g04293 567 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Trre6g04293 567 FunFam Nac domain-containing protein 86 31 175 - -
Trre6g04293 567 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 283 - -
Trre6g04293 567 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04293 Trre-Chr6 46121371 46124128 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04293 14 477 NAC Transcription Factor Family AT4G35580 40.246 3.85e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04293 NAM 4.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04293 - - gmx:100777071 654.44