Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04291 ATGGGTTCCCCTTCTCTTGAGTGTTGTCCGTCGCTCGACGATAATGGGATGGTGGTGTTGAATCTGAATTTGTTTCCCGTAGGGGTCCGATTCCAACCTACGGACGAGGATCTTATCAATTACTACCTACGTTCAAAGATCAATGGTAATGGTGACAAGGTTTGGGTTATCCGAGAAATTGATATCTGCAAATGGGAACCCTGGGATATGCCTGATTTGTCAGTGGTAAAGAGCAAGGATCAAGAGTGGTTCTTCTTCTGTCCTCAGGATCGAAAGTATCCAAAAGGGCGTCAAATGAAGAGAAAAACAAATCGTGGGTTCTGGAAGGCAACGGGAAAGGATCGTACAATTATGTCTGAAGCAATCTTGATTGGAATGAAGAAGACTCTAGTTTTCTACAGTGGTCATGCACCAAATGGGAAGAGGACTAATTGGGTTATGCACGAGTATCGTCCCACCCTGAAGGAGCTTGATGGTACCAACCCTGGACAGAAGCCATATGTCCTCTGTCGATTATTTAAGAAAAATGATGACAGCCTTGAAGTTTCAAACCGTGGTTGTGGTGAAGTGGAGCAGACTACTTCAGCTCCTTTGGCTGCCAACTATTCTTCTGAAGATATACAGTCTGTTCCAGCTCCTGTTATAGCATCCACACCACAGGTCATGGAAGAGGATGTGCAGCTGGCCGTTGTCCCTGATGTTTCTGGGGAAGCTCCTTTGGCTGCCAATCATTCTTCTGAAGAAAGACGATCAGATCCAGCTCCTGTTACAGTATCCACATCCCAGGTCATGGAAGAGGATATGCAGCTGGCCGTTATCCCTGATGTCTCTGGGGAAACCATATCTACAAAGGAGGATCAGACATTGAACTTTGGCATGTATTATAACCCAATAGACGGTCAATTATTTGATGACAGATTTTTCTCCCCCGATCTGGCGCATATGCCGCCAGAATTTAATTATCAAGCATATAATGAGTCAGACCGTCTATGGGACCTTCAATATGGAAGCAACTCAGTTGCTGGACCCAAAATGACTTGTCTGACTGCTGAAACACAATGA 1062 0.451 MGSPSLECCPSLDDNGMVVLNLNLFPVGVRFQPTDEDLINYYLRSKINGNGDKVWVIREIDICKWEPWDMPDLSVVKSKDQEWFFFCPQDRKYPKGRQMKRKTNRGFWKATGKDRTIMSEAILIGMKKTLVFYSGHAPNGKRTNWVMHEYRPTLKELDGTNPGQKPYVLCRLFKKNDDSLEVSNRGCGEVEQTTSAPLAANYSSEDIQSVPAPVIASTPQVMEEDVQLAVVPDVSGEAPLAANHSSEERRSDPAPVTVSTSQVMEEDMQLAVIPDVSGETISTKEDQTLNFGMYYNPIDGQLFDDRFFSPDLAHMPPEFNYQAYNESDRLWDLQYGSNSVAGPKMTCLTAETQ 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04291 353 ProSiteProfiles NAC domain profile. 25 175 IPR003441 GO:0003677|GO:0006355
Trre6g04291 353 SUPERFAMILY NAC domain 13 175 IPR036093 GO:0003677|GO:0006355
Trre6g04291 353 FunFam Nac domain-containing protein 86 34 178 - -
Trre6g04291 353 Gene3D NAC domain 34 179 IPR036093 GO:0003677|GO:0006355
Trre6g04291 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 245 - -
Trre6g04291 353 Pfam No apical meristem (NAM) protein 26 151 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04291 Trre-Chr6 46114530 46116723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04291 18 284 NAC Transcription Factor Family AT1G33060 48.387 6.24e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04291 NAM 3.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04291 - - gmx:100777071 378.252