Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04275 ATGGACCTCCTTCCCTCACAAAGTCTTTTGATATGCCCCGTTGAGCTAGTTAAAATCCGCATGCAACTGCAGAAAAACATCGACTATTTTTCGAAAAACAAAAGGAGCACTCCTATGAATTTGACTAAGAACATTTGGAAAAATGAGGGCATTCGCGGCATTTATCGAGGATTTGGCATCACTGTTCTTAGAGATGCACCTGCTCATGCCTTCTACTTTGGGACATATGAGTACTTGAGGGAGAAACTTCACCCTGGTTGTAGAGAAAATTGTGAAGCAAGTGTGAGTACTATGTTTATAGCAGGAGGATTAGTAGGGATATCAAGTTGGATTTTCAACTACCCTACAGATGTTATAAAGACAAGATTACAGGCTCAAACATCTTCTTCAATGAAATACAAAGGTATCTTAGATTGTACCTTAAAGATAATTAAAGAAGAAGGTTCTATTGTGCTATGGAGGGGTTTAGGAGCTACAATTGCTAGAGCATTTGTTATGAGTAGTGCTATATTTCCTGTTTATCAAATTGCTCTAAGTGAGATGATTGCTTATGCTAAACTCTACTCTGGTGCCATGTTATGTTTTGTAGATATTTACGTTCCACAAACTCGAAAAAAGTAG 621 0.3784 MDLLPSQSLLICPVELVKIRMQLQKNIDYFSKNKRSTPMNLTKNIWKNEGIRGIYRGFGITVLRDAPAHAFYFGTYEYLREKLHPGCRENCEASVSTMFIAGGLVGISSWIFNYPTDVIKTRLQAQTSSSMKYKGILDCTLKIIKEEGSIVLWRGLGATIARAFVMSSAIFPVYQIALSEMIAYAKLYSGAMLCFVDIYVPQTRKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04275 206 Pfam Mitochondrial carrier protein 94 176 IPR018108 -
Trre6g04275 206 Pfam Mitochondrial carrier protein 8 83 IPR018108 -
Trre6g04275 206 PRINTS Mitochondrial carrier protein signature 108 126 IPR002067 GO:0055085
Trre6g04275 206 PRINTS Mitochondrial carrier protein signature 153 171 IPR002067 GO:0055085
Trre6g04275 206 PRINTS Mitochondrial carrier protein signature 57 77 IPR002067 GO:0055085
Trre6g04275 206 PRINTS Mitochondrial carrier protein signature 9 23 IPR002067 GO:0055085
Trre6g04275 206 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 82 IPR018108 -
Trre6g04275 206 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 7 179 - -
Trre6g04275 206 Gene3D Mitochondrial carrier domain 6 200 IPR023395 -
Trre6g04275 206 ProSiteProfiles Solute carrier (Solcar) repeat profile. 93 180 IPR018108 -
Trre6g04275 206 SUPERFAMILY Mitochondrial carrier 8 174 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04275 Trre-Chr6 45971545 45972165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04275 7 178 Antiporters AT1G79900 54.070 8.37e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04275 K15109 - gmx:100801221 231.876