Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04242 ATGGGTCATGTTGTAATAACTAGTGGTGAGAAATTGGTGAGAGTTGAAGAAGAAGAGAAGAAGCTGAGGGAAGAAGAAGAAAGTGGAACTGAGAGTAGAGGTGGTGGTGGTGGAGAAATGAAAGGGCTTTTGAGGTGGGAGAAATTTTTGCCAAAGATGGTTTTAAGAGTGCTTTTGGTTGAAGCTGATGATTGTACAAGACAGATTATAACAGCACTTCTCAGAAAATGTAACTATAAAGTTGCTGCTGTTGCTGATGGCTTGAAGGCATGGGAAATAATGAAGGGAAGGCCGCGCAATTTCGATCTAATACTTACAGAAGTCGATTTGCCATCCATATCTGGCTATGCACTTCTCACCTTAATCATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCGTCTCAAGATTCAGTTAGCACAGTGTACAAATGCATGTGTAGAGGTGCAGCTGACTATCTCGTTAAACCGATTCGAATTAATGAATTGCGGAATTTGTGGCAGCATGTTTGGAGAAGACAATCGCAGTTAACCGCAAACGCTGGCATAAATGGTCCCCAAGATGAAACCGATACACAACAGAAAGTTGAAGCCACTGCTGAAAACAACGCTGCTGGTTATCGTTCTAGTGGCGAAGCTGCTTGCATTCAAATAAATAAGGACTTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCAAACATGGAAGCTGAGAGTGGCCTGGTTGATAATATGCAGGAATTTTCTCAGCTGAAATGTGCGGACGCATATCCAAGTGAAACAAAGACACAGGATGTTGACATTCATTTAGGCCAGGCATTGATCACGCAGGACAGTCGCACTGGAGGATTATGTGCGGCTAACTGCAACAATGGAGAGACAAACACAAATAATGGAAATGATGGTGAGGATCAAGAGCACTTTAGGATTGCTAGTACTAGTGGTGAGGATCATGACAATCACTATGTTGAAATTAACTCTACTAAGGAAGCTATTGACTTGATTGGAGCATTCCGTACTCATCCGAATTGCAGTCTCAAAAGTTCATCAATTGATTGCACAGGAAAGTTTGACGATTCTCCACAACTGGATCTTTCTCTGAGAAGCTCTCATCCCAGCAGCTTAGAGAAGGAAATCACTGAAGAGAGACACACCCTTATGCATTCCAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAGCGTCGGCCACAGTAGTAATTAACTTCACTGATCAGCAAAGAGAACAAAAGACAAATAATGAGAACCATAACTCAGAGAGTTCGATACCAAGTATGCAAAAGTGTAATATGTCTCTAGGTACATCCCAATCAAAAGAATCCGAACTTGCAACTTCACAATCCCAGCAAGGGCATTCTCTCCCAATTCCTGTAAAAGGTGTGAGGTTCAATGATCTATGTGTGACCTATGGTTCGACGCTTTCACCAGGGTTTCGTACTCAGTCTGGTCCACCATCAATGCCAGGATCTGTTGTGTTTCTCGAACAAAGCTTTCAAGCAGATGCATTTTATCAGTCAAATGTTAAAGAAAATAATAATAATTCAGAACATATTTATGAACCTCGTGGTCTGAATGGAAACACCACTCCAAACCAAATGGTGTACACACAGGAACACAAATCAGAACATGGAGAGGATCAAAGACTTATCTCCCCTACCACTGATCAAAGTGTATCGAGTAGTTTCTGTAATAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGTAATTGCGGAAGTAGCAGCAATGTCGAACAAGTTACAACTTTCAGGACATCAGTAGTTTCAGATGGTAAGAATGAAGACCTCATAAACGGTGGACATTCGCATCGATCTATCCTACGAGAAGCAGCTCTAAACAAGTTCCGCTTGAAACGGAAAGAGAGATGTTACGAAAAGAAGGTTCGATATGAGAGCAGGAAGAAACTGGCAGAACAGCGTCCTCGAGTTAAAGGACAATTTGTTCGCCAAATGAATCCCGATCCTCTTTCGGCAGAGAAAGATTGCTAA 2061 0.4173 MGHVVITSGEKLVRVEEEEKKLREEEESGTESRGGGGGEMKGLLRWEKFLPKMVLRVLLVEADDCTRQIITALLRKCNYKVAAVADGLKAWEIMKGRPRNFDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSVSTVYKCMCRGAADYLVKPIRINELRNLWQHVWRRQSQLTANAGINGPQDETDTQQKVEATAENNAAGYRSSGEAACIQINKDLIEKGSDAQSSCTKPNMEAESGLVDNMQEFSQLKCADAYPSETKTQDVDIHLGQALITQDSRTGGLCAANCNNGETNTNNGNDGEDQEHFRIASTSGEDHDNHYVEINSTKEAIDLIGAFRTHPNCSLKSSSIDCTGKFDDSPQLDLSLRSSHPSSLEKEITEERHTLMHSNASAFKRYTNRQLQASATVVINFTDQQREQKTNNENHNSESSIPSMQKCNMSLGTSQSKESELATSQSQQGHSLPIPVKGVRFNDLCVTYGSTLSPGFRTQSGPPSMPGSVVFLEQSFQADAFYQSNVKENNNNSEHIYEPRGLNGNTTPNQMVYTQEHKSEHGEDQRLISPTTDQSVSSSFCNNGNASHLNSIGYGSNCGSSSNVEQVTTFRTSVVSDGKNEDLINGGHSHRSILREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQMNPDPLSAEKDC 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04242 686 CDD psREC_PRR 57 160 - -
Trre6g04242 686 SMART REC_2 55 170 IPR001789 GO:0000160
Trre6g04242 686 ProSiteProfiles Response regulatory domain profile. 56 174 IPR001789 GO:0000160
Trre6g04242 686 MobiDBLite consensus disorder prediction 658 686 - -
Trre6g04242 686 MobiDBLite consensus disorder prediction 431 469 - -
Trre6g04242 686 PANTHER TWO-COMPONENT RESPONSE REGULATOR 55 256 IPR045279 GO:0009736
Trre6g04242 686 Pfam CCT motif 632 674 IPR010402 GO:0005515
Trre6g04242 686 Gene3D - 53 280 - -
Trre6g04242 686 MobiDBLite consensus disorder prediction 419 471 - -
Trre6g04242 686 MobiDBLite consensus disorder prediction 17 32 - -
Trre6g04242 686 MobiDBLite consensus disorder prediction 17 39 - -
Trre6g04242 686 Pfam Response regulator receiver domain 57 168 IPR001789 GO:0000160
Trre6g04242 686 SUPERFAMILY CheY-like 55 192 IPR011006 -
Trre6g04242 686 ProSiteProfiles CCT domain profile. 632 674 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04242 Trre-Chr6 45450469 45453766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04242 616 675 Response Regulator Gene Family AT5G24470 72.581 2.27e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre6g04242 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04242 K12130 - gmx:100777119 909.057