Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04238 ATGGGGCTAGCAGCACTATCCTTTTTCTCAAATCCTCCATCTTCTTCTTCTTCTTCTTCTATAACAACCTTTCATCCCTACCCATCAAACCCTTCACATTCTCTTCAACCTTCAACCTTTTTCCCTCTTCTTCAAACTCAACCTTCCTTTTCCCTCCTCACCAAATCACACCCACCAAACAACGACTTTTTCCGCTTCCGTTTTCGACCCTCCATTCACTCATTCTTCCACTGCCACTGCAGTAGCAACACACCCAATGTCGATGTCCAATTCGGGACACTTATCTCTTTATTTCAAGGAATTGGTATTAGCTTTGAGGAAACCAAATTGCTCTTGCTCAAATCCAATAAACTTACCTCTATACAACTTGATTCATTGCGTGATCGTGTTCTTTCTTTACACTCTCTCGGGTTAGACCGTGTTTCGATCAATCATATAGTTAAGGAGCGTTTAACTGTGTTAACTACTAATGAAATTGACCCATTGTTGAATTTTTTGAGTAATGAATTACATGGACAACTTGAGCAACCAAAGCTCAAGCGTCTTTTATTGAGTAACGAACCAAAAAGTTTATCCACATTTCCTCAGAAGGTTCGATTGCTTGTTGACCGAGGAGTTCCGGTTGACAAGATTGTACGTGTGCTTAACAAAGTGAATTTGTCAAAGGCAATTTGTATTAGGTCAATAGATGAAATTGAAAGAATTATAGATTTCTTAGAACCCTTTGGTGGTGTTGATTTGATTGTAAAACACCCTGCAATTCTCAATTATTGTTTGGATAATAAGCTTATTCCTAGAATTAGAGTTCTTACCGTGTTAAGTGGTGGAGACGAGGATGGTATTAGGAAAGTGTTGAATAGGTTTCCTTTTATCTTGAATTATAGCGTGGAACATGTAGAGGAACATTTACAGTTTCTGAGGTCATTTGCAGACCTAGATGATGAACAAATATTTAAGATAGTGTTGGTGTTTCCAGCTATCTTTACTAATAACAGAGAGAGGAAACTGCGTCCTAGAATACAATTTCTCAAGGAATGTGGGTTAGACTCTAGCGATATCTTCAAGTTCTTGATCAAAGCACCGTTGTTTTTGAGCGTTTCGTTTCGCGAGAACCTTGCGTATAAGTTTGTGTTTCTGGTTAAGATTGGGTATAAATATAGGACGAAAGAGTTCGCAGCGGCGATTGCGACTTCAACTAGACTAAGCTGTGAGAATATGCAGAAGCTGGTGAGTTTATTCTTGAATTACGGCTTTTCATTTGAAGACATTTTTGCTATGACTATGAAGCAGCCATTGATACTGCGATATAATCATATCTCTGTAGAGAAGAAGATTAAATACTTGATAGAGGAAATGAATCGCGACATTCGGGAATTGCTGGATTTTCCTGCATTTCTTGGGTACAAGTTTGATGACAGAATTAAGCATAGGCATGAAGTAGAGAAGGGTTTAAAAGGGGGACAAATGTCTCTCAATCAGCTTTTAAGTGTTTCAAGCAAGAACTTCACCGGCAAACGAAAAAAGGATTCTTCTGAAAAATCTGAACTGAAATAA 1554 0.3829 MGLAALSFFSNPPSSSSSSSITTFHPYPSNPSHSLQPSTFFPLLQTQPSFSLLTKSHPPNNDFFRFRFRPSIHSFFHCHCSSNTPNVDVQFGTLISLFQGIGISFEETKLLLLKSNKLTSIQLDSLRDRVLSLHSLGLDRVSINHIVKERLTVLTTNEIDPLLNFLSNELHGQLEQPKLKRLLLSNEPKSLSTFPQKVRLLVDRGVPVDKIVRVLNKVNLSKAICIRSIDEIERIIDFLEPFGGVDLIVKHPAILNYCLDNKLIPRIRVLTVLSGGDEDGIRKVLNRFPFILNYSVEHVEEHLQFLRSFADLDDEQIFKIVLVFPAIFTNNRERKLRPRIQFLKECGLDSSDIFKFLIKAPLFLSVSFRENLAYKFVFLVKIGYKYRTKEFAAAIATSTRLSCENMQKLVSLFLNYGFSFEDIFAMTMKQPLILRYNHISVEKKIKYLIEEMNRDIRELLDFPAFLGYKFDDRIKHRHEVEKGLKGGQMSLNQLLSVSSKNFTGKRKKDSSEKSELK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04238 517 Pfam mTERF 340 502 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 Pfam mTERF 277 381 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 Gene3D Transcription termination factor 3, mitochondrial 278 513 IPR038538 -
Trre6g04238 517 Gene3D Transcription termination factor 3, mitochondrial 86 277 IPR038538 -
Trre6g04238 517 SMART mt_12 282 313 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 SMART mt_12 424 455 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 SMART mt_12 318 349 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 SMART mt_12 354 385 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 SMART mt_12 456 487 IPR003690 GO:0003690|GO:0006355
Trre6g04238 517 PANTHER CGI-12 PROTEIN-RELATED 54 274 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04238 Trre-Chr6 45427455 45429088 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre6g04238 mTERF 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04238 - - gmx:100799904 546.969