Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04229 ATGATGGGTTTCCTTATTTATGTTGCTTCGGCTTCAGTTCGCGAAGGCTCAATTTGGTACTCAAGCTGTAATCTTTCTGTGGAAAATATGAGTAGTCGCTTTTCTCGCACGATCTATGTTGGTAACCTGCCCTCTGATATAAGAGAATCCGAAATTGAAGATTTGTTCTACAAGTATGGCCGCATCATGGAAATTGAATTGAAGGTTCCTCCTCGCCCTCCGTGTTATTGTTTTGTTGAGTTTGACAATGCACGAGATGCGGAAGATGCAATTCGGGGACGGGATGGTTACAATTTTGATGGATGTCGATTAAGGGTGGAGCTTGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGAGGTGGTGATGGTGGAGGCCGTGGCGGTGGCGGCGGTGGTGCTGGTGGGGGCCGTTTTGGTGTCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCGTCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTTTGTTTTGCTGAAGTTTCCCGTGATAGTGAAGGGACTTTTGGCCTTGTTGATTACACTAATTATGATGACATGAAATATGCTATTCGGAAACTGGATGATACTGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTACGAAAGCAGTCGTTCAAGGAGCCGCAGCAGAAGCCCCAGCAGGAGCAGGAGCAGAAGTCCGAAAAGGGCTAGAAGTAGGTCTTTGGAGCGATCTTTGTCTAGGTCACGATCTATTTCCAGGTCTAGGTCAAGGTCCAGGTCCAGATCCAGATCAGCATCACCAATCAAGCCTTCCAGGCCAAGATCCCGATCACGTTCAGCATCTCCACGATCACCACCACGCCAGGTTCCTGCTGGTAGTGGTTGA 927 0.4811 MMGFLIYVASASVREGSIWYSSCNLSVENMSSRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGDGGGRGGGGGGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAIRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSRSPKRARSRSLERSLSRSRSISRSRSRSRSRSRSASPIKPSRPRSRSRSASPRSPPRQVPAGSG 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04229 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 215 IPR000504 GO:0003723
Trre6g04229 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 105 IPR000504 GO:0003723
Trre6g04229 308 SMART rrm1_1 37 107 IPR000504 GO:0003723
Trre6g04229 308 SMART rrm1_1 152 225 IPR000504 GO:0003723
Trre6g04229 308 FunFam serine/arginine-rich splicing factor SR34A-like 31 150 - -
Trre6g04229 308 CDD RRM2_SF2_plant_like 151 226 - -
Trre6g04229 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 229 IPR000504 GO:0003723
Trre6g04229 308 FunFam serine/arginine-rich splicing factor SR34A-like 151 228 - -
Trre6g04229 308 MobiDBLite consensus disorder prediction 110 141 - -
Trre6g04229 308 MobiDBLite consensus disorder prediction 249 263 - -
Trre6g04229 308 Gene3D - 24 147 IPR012677 -
Trre6g04229 308 SUPERFAMILY RNA-binding domain, RBD 35 218 IPR035979 GO:0003676
Trre6g04229 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 111 IPR000504 GO:0003723
Trre6g04229 308 Gene3D - 151 228 IPR012677 -
Trre6g04229 308 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 34 299 - -
Trre6g04229 308 MobiDBLite consensus disorder prediction 226 308 - -
Trre6g04229 308 MobiDBLite consensus disorder prediction 277 302 - -
Trre6g04229 308 CDD RRM1_SF2_plant_like 37 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04229 Trre-Chr6 45312794 45317928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04229 31 235 Eukaryotic Initiation Factors Gene Family AT4G34110 23.832 8.09e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04229 K12890 - gmx:100800653 345.895