Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04226 ATGGCTGTAGCTGAGAATGTTGGAACCAAAATCGATTCTCCGACTGAGAATTTGGACAACGCTGTTGTTTCATCGGACTCAACTGAGGTTGAGAAATCGAAACCAAAAACCGATCAGAATCTGAACAACAACAGCGGTGTGATCAATCATCAACAACAACAAGACAGTGTTCCGACCGCTGCTATGACTGTTCCTAATGGTAACCATGGTTTCAAGACTCATCAAATGGGTCAGATGCATGGTAATGGGGTTCAGAATCAGCCACAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGAAATGGGGGTGAGAGTTTCAAGCGTGAAATGAGGGATTTGGAAGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTTGTTCCTCCTTCGTTGGTCACTAATTATCAAGGCTACTTAGCTGCTGGACCTAATGCTGGGTTTGGTTACCCTAACAATTTTATGATTCAGAATAATTTTGGTAATGCTAATGGACAGATTAACAGAAGGAGGAAGAGTGGCTACAATAATGCGAAGCGGAGAGGGAACAACTATAAGATGGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCGGCTCTCTTTCTTAACTGCGGCCAGGTTGTGGATTGTCGTGTATGTGGGGATCCCAATTCCATTCTCCGGTTTGCTTTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGCTATTACCCATTGAGAGTGCTGCCTTCAAAGACTGCCATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTATTGCACAAATATCGACAAGAAGCTGACTCAAGCTGATGTCAAAAACTTCTTTGAATCTATCTGTGGAGAGGTTCAGCGCCTGAGGATTCTCGGGGATTACCATCATTCAACTCGAATTGCTTTTGTGGAGTTCACTGTGGCTGAAAGTGCAATTGCAGCACTGAGCTGTAGCGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTTAGTCCATCCAAGACACCAGTCCGTGCTCGTGCAAATCGTGCTCCTATGCACTGA 1155 0.445 MAVAENVGTKIDSPTENLDNAVVSSDSTEVEKSKPKTDQNLNNNSGVINHQQQQDSVPTAAMTVPNGNHGFKTHQMGQMHGNGVQNQPQFVVNNDGYVMNGNGGESFKREMRDLEELLSKLNPMAEEFVPPSLVTNYQGYLAAGPNAGFGYPNNFMIQNNFGNANGQINRRRKSGYNNAKRRGNNYKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNIDKKLTQADVKNFFESICGEVQRLRILGDYHHSTRIAFVEFTVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARANRAPMH 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04226 384 Pfam Ataxin-2 C-terminal region 118 132 IPR009818 -
Trre6g04226 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 116 377 - -
Trre6g04226 384 FunFam Polyadenylate-binding protein-interacting protein 10 290 368 - -
Trre6g04226 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 274 IPR000504 GO:0003723
Trre6g04226 384 CDD RRM2_CID8_like 292 373 IPR034825 -
Trre6g04226 384 Gene3D - 160 276 IPR012677 -
Trre6g04226 384 Gene3D - 283 380 IPR012677 -
Trre6g04226 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 372 IPR000504 GO:0003723
Trre6g04226 384 MobiDBLite consensus disorder prediction 1 44 - -
Trre6g04226 384 SMART rrm1_1 297 368 IPR000504 GO:0003723
Trre6g04226 384 SMART rrm1_1 200 270 IPR000504 GO:0003723
Trre6g04226 384 SUPERFAMILY RNA-binding domain, RBD 162 272 IPR035979 GO:0003676
Trre6g04226 384 MobiDBLite consensus disorder prediction 10 28 - -
Trre6g04226 384 FunFam Polyadenylate-binding protein-interacting protein 11 162 276 - -
Trre6g04226 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 365 IPR000504 GO:0003723
Trre6g04226 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 264 IPR000504 GO:0003723
Trre6g04226 384 CDD RRM1_CID8_like 197 276 IPR034823 -
Trre6g04226 384 SUPERFAMILY RNA-binding domain, RBD 287 377 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04226 Trre-Chr6 45129045 45133890 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04226 177 367 Eukaryotic Initiation Factors Gene Family AT1G34140 25.628 2.64e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04226 - - gmx:106794116 587.03