LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre6g04225	ATGGCGGTTGCTGATAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACGTTGTATCATCTGACTCAGCTGAGGTGGAGAAATCGAAATCTAGGACTGATCAGGATGTGAACAACAATGGTGTGTTCAATCATCAACACCAAGAAAGAGTTCCCAATGGTAATTATGGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAATGGGGTTCAGAACCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGTGTCAGAAATGGTGAGAATGGTGGCGAGAGTTTCAAGCGCGAAATGAGGGATTTGGAAGAGCTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTTCCTCCATCACTAACAAATAATCAGGGCTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTCCTAACAATTTTATACTTTTGAATAATTATGCTAATGCTAACGGCCAAACTAACCGAAGGAGGAAGAATGGCTTTACTACTAATGGGAAGCGAAGAGTGAATCATAAGGTAGATATGGAGAAAAGAGAAGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCATCTCTCTTTCTTAATTGCGGCCAGGTTGTTGATTGCCGTGTATGCGGAGATCCCAATTCTATTCTCCGATTTGCTTTCATTGAGTTTACTGATGAAGAAAGTGCTAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGATATTACCCGCTGAGAGTGCTGCCTTCCAAGACTGCTATTGCACCTGTCAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAACATCGACAAGAAGCTGACTCAAGCTGATGTGAAACACTTCTTTGAATCAATCTGTGGAGAGGTCCAACGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCTGCTCTAAGCTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCTTCAAAGACACCAGTCCGAGCTCGTTCTCCTCGTAGTCCATGA	1140	0.443	MAVADNVGAKIGSSSQNLDNNNNVVSSDSAEVEKSKSRTDQDVNNNGVFNHQHQERVPNGNYGFKTHQMGQMHANGVQNQQFVVNNDGYVMNGVRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNQGYLAAGPAAGFGYPPNNFILLNNYANANGQTNRRRKNGFTTNGKRRVNHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP	379

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre6g04225	379	CDD	RRM2_CID8_like	289	370	IPR034825	-
	Trre6g04225	379	SMART	rrm1_1	197	267	IPR000504	GO:0003723
	Trre6g04225	379	SMART	rrm1_1	294	365	IPR000504	GO:0003723
	Trre6g04225	379	SUPERFAMILY	RNA-binding domain, RBD	186	272	IPR035979	GO:0003676
	Trre6g04225	379	MobiDBLite	consensus disorder prediction	41	57	-	-
	Trre6g04225	379	CDD	RRM1_CID8_like	194	273	IPR034823	-
	Trre6g04225	379	MobiDBLite	consensus disorder prediction	9	30	-	-
	Trre6g04225	379	SUPERFAMILY	RNA-binding domain, RBD	284	374	IPR035979	GO:0003676
	Trre6g04225	379	FunFam	Polyadenylate-binding protein-interacting protein 10	287	365	-	-
	Trre6g04225	379	FunFam	Polyadenylate-binding protein-interacting protein 11	158	273	-	-
	Trre6g04225	379	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	293	369	IPR000504	GO:0003723
	Trre6g04225	379	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	113	374	-	-
	Trre6g04225	379	Pfam	Ataxin-2 C-terminal region	115	129	IPR009818	-
	Trre6g04225	379	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	196	271	IPR000504	GO:0003723
	Trre6g04225	379	MobiDBLite	consensus disorder prediction	1	57	-	-
	Trre6g04225	379	Gene3D	-	280	376	IPR012677	-
	Trre6g04225	379	Gene3D	-	157	273	IPR012677	-
	Trre6g04225	379	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	295	357	IPR000504	GO:0003723
	Trre6g04225	379	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	261	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre6g04225	Trre-Chr6	45108382	45112471	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre6g04225	195	357	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.749	9.06e-11	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre6g04225	-		-	gmx:106794116	581.637