Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre6g04224 | ATGTCACATACTAGGCAAAACAATATGATGAGTCCAAACGCTGTTCCTAAACACGTTGGTGACACAACTTATACTAAGATTTTTGTTGGTGGATTGGCTTGGGAGACCAAAAGAGACACACTCAAACGTTATTTTGATCAGTTTGGTGATATCTTAGAAGCTGTTGTCATCACTGATAGAACCACTGGAAAATCAAAAGGATATGGCTTTGTTACCTTCAAGGAACCAAATTCTGCAATACTTGCTTGCCAGAATCCTAATCCTGTGATTGATGGAAGAAGAGCTAACTGTAATATTGCATCTCAACAACCTGATTCAGGAAAGCAGAAAATCAATAGTCCTTCATGGACTAATGCACCAATTCAATATCAAGGTTCATCAATATATTTCAATCAACATGTACCTCAATATGCATTCCCTTATCCAGTTTACAGGTACCCTCAACCTGGTTACCATCGTCCACAAGACATTTATGAAATGAGCAATTATAATAATGCATATGGTGGACCACAATTTCCATATTGTTGGATTCCAGCAGCATATTACCAACCCTATTATGGCCTTAATAGACAATTAATTCCAATAACATATGTGAAAAAGACACAATTCCATGATGTTGTTGGCATATCAGGAACTATTTCACCTTCTACTTCAATTTCTAGCACTGGAGCTGCAACAAGAGTGGTAGAATCACCCAAAGATCAAACATCTTCAGCTTAA | 720 | 0.3722 | MSHTRQNNMMSPNAVPKHVGDTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKEPNSAILACQNPNPVIDGRRANCNIASQQPDSGKQKINSPSWTNAPIQYQGSSIYFNQHVPQYAFPYPVYRYPQPGYHRPQDIYEMSNYNNAYGGPQFPYCWIPAAYYQPYYGLNRQLIPITYVKKTQFHDVVGISGTISPSTSISSTGAATRVVESPKDQTSSA | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre6g04224 | 239 | PANTHER | BOULE-RELATED | 11 | 194 | - | - | |
| Trre6g04224 | 239 | MobiDBLite | consensus disorder prediction | 215 | 239 | - | - | |
| Trre6g04224 | 239 | CDD | RRM_RBM24_RBM38_like | 25 | 100 | - | - | |
| Trre6g04224 | 239 | Gene3D | - | 1 | 113 | IPR012677 | - | |
| Trre6g04224 | 239 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 27 | 85 | IPR000504 | GO:0003723 | |
| Trre6g04224 | 239 | SMART | rrm1_1 | 26 | 98 | IPR000504 | GO:0003723 | |
| Trre6g04224 | 239 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 102 | IPR000504 | GO:0003723 | |
| Trre6g04224 | 239 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 112 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre6g04224 | Trre-Chr6 | 45083340 | 45084872 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre6g04224 | 21 | 110 | C2H2 Transcription Factor Family | AT2G19380 | 39.560 | 1.03e-15 | 73.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre6g04224 | - | - | cam:101508568 | 336.65 |