Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04220 ATGATTCATATAAGATTTATTTTGCTACTATGTTTCCTACTTCATAATTTTCATGTCATCATTTGCAACAATAACACCACAGATAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAAACAAGATTCTAGTCATTGTACTTGGTATGGTGTCAACTGTTCCAAAGTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTATCTTCATTCACTTGACCTTTCTAATAACAGTTTTGATGGCCAAATTCCCAACCAATTTTCTCATCTTTCACTTCTTAATGTCATTAAATTACCTTACAACAATCTGTCTGGTACACTTCCACCTCAATTGGGTCAACTGCATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCACAGGTAAAATTCCATCAAGTTTTGGTAATCTTTTTTCTCTTAAGAATCTTTCCATGGCAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTGGGAAATCTACACAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCACCGGCGAGATTCCTACTTCTTTCTACTTCAATCTCTCTTCCTTGGAATTTTTATCCTTAACAATGAACAATTTATCAGGCATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAATTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCACCAACTTCAAAAATCTCACTTATCTGGTTCTTAGTAATAATTTGCTCACTTCCACCACATCATTGAATTTTGAATTCTTTGAGTCTCTTAGAAACTCCACTCAGTTAGAAATTCTTAAGGTCAATGATAACAAATTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAAGAGTTCTGTGTTGCTAATAATGAGCTAAATGGAACTATTCCTAAGGGAATTCAAAAATTGCAAAATCTCACATCATTCTCTTTTGAACAGAATAATTTCACCGGCGAGTTACTATTAGAATTAGGAACACTCAAGAAACTGCAGAGGCTATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGTAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCAGTTCTCAGGTAGAATTCCCACTAGTATCGGACAATGCGAGAGTTTGACTATACTTGACTTAGAAAAGAATAAGCTTGTAGGTGTCATACCAATGGAGATTTTTCAACTCTATGGCTTGACAGCCTTGTACTTAAATGGAAATTCGTTGAACGGTTCGCTTCCTCCTGTATCCAACATGAGGCAGCTAGAGACAATGTTTGTTTCGGACAACAAGCTGTCAGGGAACATTCCTGAAATCAAAGCAAACAGCTTGAAGACGCTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATAGTTTAGGGGATTTAGCATCCCTTGAGACACTGGATTTATCATCAAACAATCTCACTGGAGAGGTTCCTATGAAAGGTGTTTTTATGAACCTAAGTCAGGTTGATCTCAATGGTAAGAAAAAGAAGAGAAACATTTTACTTCCTATCATACTAGGGATTATAGGCGCGACTGTTTTGTTCGTGTCAATGATCTATCTACTGTGGCGACTAATGTCCTTAAAGAAGAAACACAAGCAGGAGATAAGAACTTTGTCATCAATTCCTCTAAAGGGGATGCCTCAAAATATAACCTATGATGAAGATATGGTTGCACATGTAGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCTGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCGACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTTCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAACATGAATAAATTTGCATTAGACATGGATGACAAGAAATTACTTAAGATTGTTGATCAAAGACTTATAAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGTGCATCTGTCAACAACAGTTACAGTGACGGTATTCCAGATTGGATGCACAAAGCTGAGGAGTGTATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTATATCATATCATCCTAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCGTGGAATTAAGCAGTCTATACTAGGCTTGTGA 2406 0.3595 MIHIRFILLLCFLLHNFHVIICNNNTTDKDILLSFKLQVTDPNNALSSWKQDSSHCTWYGVNCSKVDQRVQSLTLSGLSLSGKLPSNLSNLTYLHSLDLSNNSFDGQIPNQFSHLSLLNVIKLPYNNLSGTLPPQLGQLHNLQILDFSVNNLTGKIPSSFGNLFSLKNLSMARNMFFGEIPSELGNLHNLSRLQLSQNNFTGEIPTSFYFNLSSLEFLSLTMNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQIIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTSLNFEFFESLRNSTQLEILKVNDNKLAGELPNSVAYLSSNLQEFCVANNELNGTIPKGIQKLQNLTSFSFEQNNFTGELLLELGTLKKLQRLLIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPTSIGQCESLTILDLEKNKLVGVIPMEIFQLYGLTALYLNGNSLNGSLPPVSNMRQLETMFVSDNKLSGNIPEIKANSLKTLLMERNKFSGSIPNSLGDLASLETLDLSSNNLTGEVPMKGVFMNLSQVDLNGKKKKRNILLPIILGIIGATVLFVSMIYLLWRLMSLKKKHKQEIRTLSSIPLKGMPQNITYDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLNMNKFALDMDDKKLLKIVDQRLINQFEYSTQNFSSDCNSSSASVNNSYSDGIPDWMHKAEECIAASMRVGLSCISYHPKDRWTMREAVSKLRGIKQSILGL 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04220 801 PRINTS Leucine-rich repeat signature 528 541 - -
Trre6g04220 801 PRINTS Leucine-rich repeat signature 94 107 - -
Trre6g04220 801 SUPERFAMILY L domain-like 310 563 - -
Trre6g04220 801 Pfam Protein tyrosine and serine/threonine kinase 617 697 IPR001245 GO:0004672|GO:0006468
Trre6g04220 801 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 301 - -
Trre6g04220 801 SMART LRR_typ_2 212 235 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 528 553 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 187 211 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 459 483 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 139 162 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 91 114 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 387 410 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 411 435 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 284 310 IPR003591 -
Trre6g04220 801 SMART LRR_typ_2 237 260 IPR003591 -
Trre6g04220 801 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Trre6g04220 801 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Trre6g04220 801 Gene3D Ribonuclease Inhibitor 282 569 IPR032675 -
Trre6g04220 801 PANTHER RECEPTOR-LIKE PROTEIN 55 310 601 - -
Trre6g04220 801 FunFam Inactive leucine-rich repeat receptor-like protein kinase 309 564 - -
Trre6g04220 801 ProSiteProfiles Protein kinase domain profile. 462 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04220 801 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre6g04220 801 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre6g04220 801 Pfam Leucine rich repeat 389 448 IPR001611 GO:0005515
Trre6g04220 801 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre6g04220 801 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre6g04220 801 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515
Trre6g04220 801 SUPERFAMILY Protein kinase-like (PK-like) 616 794 IPR011009 -
Trre6g04220 801 Gene3D Transferase(Phosphotransferase) domain 1 612 798 - -
Trre6g04220 801 SUPERFAMILY L domain-like 50 378 - -
Trre6g04220 801 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04220 Trre-Chr6 45022517 45025649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04220 616 796 Receptor kinase-like Gene Family AT3G47570 34.783 5.68e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04220 PK_Tyr_Ser-Thr 8.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04220 - - mtr:11428205 904.049