Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04219 ATGATTCATATAAGATTTATTTTGCTACTATGTTTCCTACTTCATAATTTTCATGTCATCATTTGCAACAATAACACCACAGATAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAAACAAGATTCTAGTCATTGTACTTGGTATGGTGTCAACTGTTCCAAAGTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTATCTTCATTCACTTGACCTTTCTAATAACAGTTTTGATGGCCAAATTCCCAACCAATTTTCTCATCTTTCACTTCTTAATGTCATTAAATTACCTTACAACAATCTGTCTGGTACACTTCCACCTCAATTGGGTCAACTGCATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCACAGGTAAAATTCCATCAAGTTTTGGTAATCTTTTTTCTCTTAAGAATCTTTCCATGGCAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTGGGAAATCTACACAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCACCGGCGAGATTCCTACTTCTTTCTACTTCAATCTCTCTTCCTTGGAATTTTTATCCTTAACAATGAACAATTTATCAGGCATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAATTATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCACCAACTTCAAAAATCTCACTTATCTGGTTCTTAGTAATAATTTGCTCACTTCCACCACATCATTGAATTTTGAATTCTTTGAGTCTCTTAGAAACTCCACTCAGTTAGAAATTCTTAAGGTCAATGATAACAAATTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAAGAGTTCTGTGTTGCTAATAATGAGCTAAATGGAACTATTCCTAAGGGAATTCAAAAATTGCAAAATCTCACATCATTCTCTTTTGAACAGAATAATTTCACCGGCGAGTTACTATTAGAATTAGGAACACTCAAGAAACTGCAGAGGCTATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGTAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCAGTTCTCAGGTAGAATTCCCACTAGTATCGGACAATGCGAGAGTTTGACTATACTTGACTTAGAAAAGAATAAGCTTGTAGGTGTCATACCAATGGAGATTTTTCAACTCTATGGCTTGACAGCCTTGTACTTAAATGGAAATTCGTTGAACGGTTCGCTTCCTCCTGTATCCAACATGAGGCAGCTAGAGACAATGTTTGTTTCGGACAACAAGCTGTCAGGGAACATTCCTGAAATCAAAGCAAACAGCTTGAAGACGCTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATAGTTTAGGGGATTTAGCATCCCTTGAGACACTGGATTTATCATCAAACAATCTCACTGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCTGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAGGCTTCGACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTTCTAGAGATATTCATAGCCAAAAAACCAACAGATGAAATGTTCAAAGAAGGATTAAACATGAATAAATTTGCATTAGACATGGATGACAAGAAATTACTTAAGATTGTTGATCAAAGACTTATAAACCAATTTGAGTATTCAACACAAAATTTCAGCAGTGATTGTAATAGTAGTAGTGCATCTGTCAACAACAGTTACAGTGACGGTATTCCAGATTGGATGCACAAAGCTGAGGAGTGTATAGCTGCTTCAATGAGAGTTGGCTTGTCATGTATATCATATCATCCTAAAGATCGGTGGACAATGAGGGAAGCCGTATCAAAATTGCGTGGAATTAAGCAGTCTATACTAGGCTTGTGA 2142 0.3571 MIHIRFILLLCFLLHNFHVIICNNNTTDKDILLSFKLQVTDPNNALSSWKQDSSHCTWYGVNCSKVDQRVQSLTLSGLSLSGKLPSNLSNLTYLHSLDLSNNSFDGQIPNQFSHLSLLNVIKLPYNNLSGTLPPQLGQLHNLQILDFSVNNLTGKIPSSFGNLFSLKNLSMARNMFFGEIPSELGNLHNLSRLQLSQNNFTGEIPTSFYFNLSSLEFLSLTMNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQIIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTSLNFEFFESLRNSTQLEILKVNDNKLAGELPNSVAYLSSNLQEFCVANNELNGTIPKGIQKLQNLTSFSFEQNNFTGELLLELGTLKKLQRLLIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPTSIGQCESLTILDLEKNKLVGVIPMEIFQLYGLTALYLNGNSLNGSLPPVSNMRQLETMFVSDNKLSGNIPEIKANSLKTLLMERNKFSGSIPNSLGDLASLETLDLSSNNLTDFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEIFIAKKPTDEMFKEGLNMNKFALDMDDKKLLKIVDQRLINQFEYSTQNFSSDCNSSSASVNNSYSDGIPDWMHKAEECIAASMRVGLSCISYHPKDRWTMREAVSKLRGIKQSILGL 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04219 713 ProSiteProfiles Leucine-rich repeat profile. 530 551 IPR001611 GO:0005515
Trre6g04219 713 SMART LRR_typ_2 212 235 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 528 551 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 187 211 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 459 483 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 139 162 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 91 114 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 387 410 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 411 435 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 284 310 IPR003591 -
Trre6g04219 713 SMART LRR_typ_2 237 260 IPR003591 -
Trre6g04219 713 Pfam Protein tyrosine and serine/threonine kinase 541 609 IPR001245 GO:0004672|GO:0006468
Trre6g04219 713 PRINTS Leucine-rich repeat signature 528 541 - -
Trre6g04219 713 PRINTS Leucine-rich repeat signature 94 107 - -
Trre6g04219 713 ProSiteProfiles Protein kinase domain profile. 322 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04219 713 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 544 - -
Trre6g04219 713 Gene3D Transferase(Phosphotransferase) domain 1 533 710 - -
Trre6g04219 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre6g04219 713 Pfam Leucine Rich Repeat 94 115 IPR001611 GO:0005515
Trre6g04219 713 Pfam Leucine Rich Repeat 530 547 IPR001611 GO:0005515
Trre6g04219 713 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre6g04219 713 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 301 - -
Trre6g04219 713 SUPERFAMILY L domain-like 49 377 - -
Trre6g04219 713 SUPERFAMILY RNI-like 308 549 - -
Trre6g04219 713 Gene3D Ribonuclease Inhibitor 342 505 IPR032675 -
Trre6g04219 713 Gene3D Ribonuclease Inhibitor 281 341 IPR032675 -
Trre6g04219 713 Pfam Leucine rich repeat 389 448 IPR001611 GO:0005515
Trre6g04219 713 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre6g04219 713 SUPERFAMILY Protein kinase-like (PK-like) 541 706 IPR011009 -
Trre6g04219 713 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre6g04219 713 PANTHER POLYGALACTURONASE INHIBITOR 1 448 542 - -
Trre6g04219 713 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre6g04219 713 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Trre6g04219 713 Gene3D Ribonuclease Inhibitor 180 280 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04219 Trre-Chr6 45022517 45025649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04219 535 707 Receptor kinase-like Gene Family AT5G20480 34.659 2.10e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04219 PK_Tyr_Ser-Thr 2e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04219 - - mtr:11428205 822.772