Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04214 ATGATCCATATAAGACATATTTTGCTACTATGTTTCCTACTTCATAATTTTCATGTCATCATTTGCAACAATAGCACCACAGACAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAGACAAGATTATAATCACTGTACTTGGTATGGTGTCAACTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTCTCTGGTAAATTACCTTCCAATCTCTCAAACCTCACATACCTTCAAATACTTGACCTTTCCAATAACAATTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTCCTTAGTGTCATTCATTTACCTTACAACAATCTCACTGGTACACTTCCACCACAATTGGGTCAACTCCATAATCTAAAACATTTAGACTTTTCTGTGAATAATCTCACAGGTAAAATCCCTTCATCATTTGGCAATCTCTTTTCTCTCGAAAAACTTTTCTTGTCAAGCAACAGATTTGTTGGTGAGATTCCGAGTGAATTTGGTAATCTCAGCAATCTTTCAACACTTCAACTCACAGTTAACAATTTCAGTGGCAAGTTTCCTTTTTATATGTTCTTCAACTTATCTTCCTTAGTTGACTTATCACTCACAAATAACAATCTATCAGGCGAGTTGCCGCAAAATTTTGGCAACTACTTTCCAAATTTAAGGACACTTGCCTTGTCAACTAATAGATTTGAAGGGGTGATTCCTAATTCTATATCCAATTCATCACATCTTGACAAAATTGATTTATCTAACAATAGTTTTCATGGGCCAATTCCACTTTTCAAAAACTTGAAAAACCTCACTTATTTGGCTCTTGATTATAACTATCTCACTTCCACCACATCCTTGAATTTTCAGTTCTTTGATTCTCTTAGAAACTCCACTCTGTTGGAAATTCTTAAGGTGAACGATAACAACTTGGCTGGGGAACTTCCAAATTCTATTGCGAATCTTTCAAGCAATCTACAACAGTTTTGTGTTGCCAATAATCAGCTAAGTGGAAGCATTCCTCGTGGAATAAACAAGTTACAAAGTCTCACATCATTCTCTTTTGAACAGAATTATTTTAATGGAGAGTTTCCATTAGAATTAGGATCACTGGAAAAACTGCAGCAGCTTGTGATATCTCAAAATAGATTGTCTGGTGAAATTCCAGACGTGTTTGGCAATTTAACAAATCTGTATAAGCTTCAAATATGGAACAACCAGTTCACAGGTAGAATTCCTGCAAGTATTGGAAAATGCAAGAGATTGACTGATCTTCAGTTAGGAATAAATAAGTTTGTTGGTGCCATACCAATAGAGATTTTTCAACTCTCTGGCTTGACAAACTTGAATTTAAAAGGAAACTCTTTGAATGGTTCGCTTCCTTCTGAATTCGGCAAAATGGAGCAGCTTGAATTCATGGATGTTTCGGACAACAAACTGTCGGGGAACATTCCTATAATCGAACTATACAGCTTGAGGACGCTTTTGATGGAAAGAAACAAATTTAGTGGCTCAATTCCAAATAGTCTAGGGGATTTAGCATCCCTTGAGACACTGGATCTATCATCAAACAATCTCACTGGTTCAATTCCTGAGAGTTTAGAAAATCTCAAATATATGGTCAGCTTAAATTTGTCTTTCAACAAATTGGAAGGAGAGATTCCTGTGAAAGGTGTTTTTATGAACCAAAGCCAGATTGATCTCCAAGGTAACAACAAACTATGTGGCCTTACCAATCAAGTTATGCACAAGTTTGGAGTCACTTTGTGTGTTGCAGGTAAGAAAAACAAGAGAAACATTTTACTTCCTATCACACTCGGGATTATAGGCGCGGCTGTTTTGTTCGCTTCAATGATCTATCTACTGTGGCGGCAAATGTCCATAAAAAAGAAACACAAAGAGGAGAAAAGAACTTTGACATCAACTCCTCTAAAGGGGATGCCTCAAAATATATCCTATGGTGATATTAGGCTTGCTACAAACAATTTTTCAGCTGCAAACATGGTTGGAAAAGGAGGCTTTGGTTCTGTTTATAAGGGTGTGTTCAACATCAGCACTTGTGAAAGTCAAACCACCACACTTGCTGTTAAAATTCTTGACCTGCAACAAAGCAAAGCCTCTCAGAGTTTTAATGCAGAATGTGAAACTTTGAAAAATGTTCGGCATCGGAATCTGGTCAAGGTGATTACTTCTTGCTCCAGCACTGATTATAAGGGGGAAGAGTTTAAGGCTCTTGTTATGCAATTCATGCCTAATGGTAATTTGGAGATGAGTTTATACCCGGAAGATCTTGAATCGGGCTCTTCGTTAACCTTGTTGCAAAGGTTAAACATTGCCATTGATGTTGCATCTGCAATGGACTACTTGCACGATGACTGTGATCCACCAATAGTCCATTGTGATCTCAAACCTGCCAATGTCCTAATAGATGAAGACATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCGGAGAAACATAGCAGTACTCTAGAATTGAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTAGGTGGAAAAGCTTCAACTAGTGGTGATGTGTACAGTTTTGGAATCCTACTTCTAGAGATGTTCATGGCCAAAAAGCCAACTGATGAAATGTTCAAAGAAGGATTAAGCATGAACAAATTTGTATTAGACATGGATGACAAGCAATTACTTAAGGTTGTTGATCAAAGACTTATCAACCAATTTGAGTATTCAACACAAGATTTAAGCAGTGATTGTCATAGTAGTAGTGTGTCTGTGGACAACAGTTACAGTGACGGTATCCCAGATTGGATGCACAAAGCTGAGGAGTGTATAGCAGCTTCAATGAGAGTTGGCTTGTCATGTGTATCACATCATCCTAAAGATCGGTGGACAATGAGGGAAGCCTTATCAAAATTGCATGGAATTAAGCAGTCTATACTAGGCTTGTGA 3018 0.3757 MIHIRHILLLCFLLHNFHVIICNNSTTDKDILLSFKLQVTDPNNALSSWRQDYNHCTWYGVNCSKLDQRVQSLTLSGLSLSGKLPSNLSNLTYLQILDLSNNNFDGQIPFQFSHLSLLSVIHLPYNNLTGTLPPQLGQLHNLKHLDFSVNNLTGKIPSSFGNLFSLEKLFLSSNRFVGEIPSEFGNLSNLSTLQLTVNNFSGKFPFYMFFNLSSLVDLSLTNNNLSGELPQNFGNYFPNLRTLALSTNRFEGVIPNSISNSSHLDKIDLSNNSFHGPIPLFKNLKNLTYLALDYNYLTSTTSLNFQFFDSLRNSTLLEILKVNDNNLAGELPNSIANLSSNLQQFCVANNQLSGSIPRGINKLQSLTSFSFEQNYFNGEFPLELGSLEKLQQLVISQNRLSGEIPDVFGNLTNLYKLQIWNNQFTGRIPASIGKCKRLTDLQLGINKFVGAIPIEIFQLSGLTNLNLKGNSLNGSLPSEFGKMEQLEFMDVSDNKLSGNIPIIELYSLRTLLMERNKFSGSIPNSLGDLASLETLDLSSNNLTGSIPESLENLKYMVSLNLSFNKLEGEIPVKGVFMNQSQIDLQGNNKLCGLTNQVMHKFGVTLCVAGKKNKRNILLPITLGIIGAAVLFASMIYLLWRQMSIKKKHKEEKRTLTSTPLKGMPQNISYGDIRLATNNFSAANMVGKGGFGSVYKGVFNISTCESQTTTLAVKILDLQQSKASQSFNAECETLKNVRHRNLVKVITSCSSTDYKGEEFKALVMQFMPNGNLEMSLYPEDLESGSSLTLLQRLNIAIDVASAMDYLHDDCDPPIVHCDLKPANVLIDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFGILLLEMFMAKKPTDEMFKEGLSMNKFVLDMDDKQLLKVVDQRLINQFEYSTQDLSSDCHSSSVSVDNSYSDGIPDWMHKAEECIAASMRVGLSCVSHHPKDRWTMREALSKLHGIKQSILGL 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04214 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 303 611 - -
Trre6g04214 1005 ProSitePatterns Protein kinases ATP-binding region signature. 685 713 IPR017441 GO:0005524
Trre6g04214 1005 PANTHER OS04G0122200 PROTEIN 63 185 - -
Trre6g04214 1005 ProSiteProfiles Protein kinase domain profile. 679 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04214 1005 Gene3D Transferase(Phosphotransferase) domain 1 766 1002 - -
Trre6g04214 1005 FunFam LRR receptor-like serine/threonine-protein kinase EFR 649 765 - -
Trre6g04214 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 301 - -
Trre6g04214 1005 Gene3D Phosphorylase Kinase; domain 1 660 765 - -
Trre6g04214 1005 Pfam Protein tyrosine and serine/threonine kinase 682 902 IPR001245 GO:0004672|GO:0006468
Trre6g04214 1005 SUPERFAMILY Protein kinase-like (PK-like) 655 995 IPR011009 -
Trre6g04214 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 766 1004 - -
Trre6g04214 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Trre6g04214 1005 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre6g04214 1005 Gene3D Ribonuclease Inhibitor 27 137 IPR032675 -
Trre6g04214 1005 SMART serkin_6 679 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04214 1005 Gene3D Ribonuclease Inhibitor 138 209 IPR032675 -
Trre6g04214 1005 Gene3D Ribonuclease Inhibitor 210 600 IPR032675 -
Trre6g04214 1005 ProSiteProfiles Leucine-rich repeat profile. 531 554 IPR001611 GO:0005515
Trre6g04214 1005 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre6g04214 1005 SUPERFAMILY RNI-like 208 572 - -
Trre6g04214 1005 SMART LRR_typ_2 529 553 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 411 435 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 505 528 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 212 235 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 387 410 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 163 186 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 284 310 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 91 114 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 139 162 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 459 482 IPR003591 -
Trre6g04214 1005 SMART LRR_typ_2 237 260 IPR003591 -
Trre6g04214 1005 SUPERFAMILY L domain-like 25 311 - -
Trre6g04214 1005 Pfam Leucine rich repeat 437 496 IPR001611 GO:0005515
Trre6g04214 1005 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Trre6g04214 1005 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Trre6g04214 1005 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre6g04214 1005 PRINTS Leucine-rich repeat signature 529 542 - -
Trre6g04214 1005 PRINTS Leucine-rich repeat signature 94 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04214 Trre-Chr6 44981837 44984978 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04214 27 1000 Receptor kinase-like Gene Family AT3G47570 40.810 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04214 PK_Tyr_Ser-Thr 8.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04214 - - mtr:11428205 1548.1