Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04213 ATGGATAATTACTTAGAATTTCAAGTCCTAAACCCTCAGATAAACTCTCCTTTAGTATACAACAAGGAAGGTATCCCACCTGATCAGCAGAGCTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAATATTCAGAAGGAGGCCACCCTTCACCTTGTGCTCCGTCTTCGAGGTGGTTTCTGA 201 0.4527 MDNYLEFQVLNPQINSPLVYNKEGIPPDQQSLIFAGKQLEDGRTLADYNIQKEATLHLVLRLRGGF 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04213 66 PRINTS Ubiquitin signature 42 63 IPR019956 -
Trre6g04213 66 PRINTS Ubiquitin signature 21 41 IPR019956 -
Trre6g04213 66 PANTHER UBIQUITIN 20 65 - -
Trre6g04213 66 Pfam Ubiquitin family 19 63 IPR000626 GO:0005515
Trre6g04213 66 Gene3D - 17 65 - -
Trre6g04213 66 SMART ubq_7 5 61 IPR000626 GO:0005515
Trre6g04213 66 SUPERFAMILY Ubiquitin-like 19 65 IPR029071 -
Trre6g04213 66 ProSiteProfiles Ubiquitin domain profile. 10 65 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04213 Trre-Chr6 44980645 44980845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04213 19 66 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 87.500 9.63e-27 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04213 - K08770 aew:130761596 92.4337