Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04212 ATGACCCATATACTATTTAATTTGCTACTATGTTTTCTACTTCATAATTTTCATGTCATCATTTGCAACAATAGCACCACAGACAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTTTATCAAGTTGGAGACAAGATTCTAATCATTGTACTTGGTATGGTGTCAACTGTTCCAAACTTGATCAAAGAGTTCAATCTCTAACCTTATCAGGACTTAGTCTAACTGGTAAACTACCTTCTAATCTCTCCAACCTCACTTACCTTAATTCACTTGACCTTTCAAATAACAGTTTTGATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTTCTTAATGTCATTAAATTACCTTACAACAATCTCTCTGGTACACTTCCACCTCAATTGGGTCAACTCCATAATCTACAAATTTTGGACTTTTCTGTCAATAATCTCACAGGTAAAATTCCATCAACTTTTGGTAATCTCTTTTCTCTTAAGAATCTTTCATTAAAAAGAAACATGTTTTTTGGTGAGATTCCAAGTGAATTAGGCAATCTCCACAATCTTTCAAGACTTCAACTCTCACAAAACAATTTCACCGGCGAGATTCCTACTTCTTTCTTCTTCAATCTCTCTTCCTTGGACTTTTTATCCTTAACAAGGAACAATTTATCCGGAATTTTGCCACAAAAATTCGGTGACTACTTTCCGAATTTAAGGACACTTACTTTGGCAACTAATAGATTTGAAGGGGTGATTCCTAATTCCATATCCAATTTATCACATCTTCAAATCATTGATCTTGCTAACAATAGATTTCATGGGCCAATACCTCTTTTCACCAACTTCAAAAATCTCACTTATTTGGTTCTTAGTAATAATTTGCTCACTTCCACCACAGCATTGAATTTTCAATTCTTTAATTCTCTTAGAAACTCCACTCAGTTGGAAATTCTTATGGTCAATGATAACAACTTGGCTGGTGAACTTCCAAATTCTGTTGCTTATCTTTCAAGCAATCTACAACAGTTCTATGTTGATCATAATAAGCTAAATGGAACTATTCCTAAGGGAATGAAAAAATTTCAAAATCTCACATCCTTATCTTTTGAACATAATTATTTCACCGGTGAGTTACCATTAGAATTAGGAACACTAAAGAAATTGGAGCAGATATTGATATACCAAAATAGATTGTCTGGTGAAATTCCAGACATATTTGGTAATTTTACAAATCTGTTTATTCTTGCATTAGGAAACAACCAGTTCTCAGGTAGAATTCCCATGAGTATCGGAGAATGCGAGAAATTGAATATACTTGACTTAGAAATGAATAATTTTGTTGGTGTCATACCAATGGAGATTTTTCAACTCTCTGACTTGACCGCTTTGTACTTACATGGAAATTCTCTGAACGGTTCGCTTCCTCCTGTATCCAACATGGAGCAGCTAGGGATAATGTATGTTTCAAACAACATGCTGTCAGGGAACATTCCTGAAATCAAAGCAAATGGCTTGAAGATGCTTTTGATGGAAGGAAACAAATTTAGTGGCTCAATTCCAATTAGTCTAGGGGATTTAGCATCCCTTGAGACACTGGATTTATCATCAAACAATCTCACTGGTAAGAAAAAGAAGAGAAACATTTTACTTCCTATAATTCTAGGGATTATAGGCACCACTGTTTTGTTCGCGTCAATGATCTATCTACTGTGGAGGCTAATGTTCTTAAAGAAGAAACACAAGGAGGAGAAAAGAACTTTGTCATTAATCCCTCTAAAGGGGCTACCTCAAAATATAACCTATGGTGATATTAGGCGTGCTACAAACAATTTTTCAGCTGCAAACATGGTTGGAAAAGGAGGCTTTGGTTCTGTTTACAAGGGTGTGTTCAACATCAGCACTTGTGAAAGTCAAACCACCACACTTGCTGTTAAAATTCTGGACCTGCAACAAAGCAAAGCCTCTAAGAGTTTTAATGCGGAATGTGAAACTTTGAAAAATGTTCGGCATCGAAATCTGGTCAAGGTGATTACTTCTTGCTCCAGCACTGATTACAAGGGGGATGAGTTTAAGGCCCTTGTTTTGCAATTCATGCCTAATGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCAGAGAAACATAGCAGCACTCTAGAATTGAAGGGATCGATCGGCTATATCGCCCCAGAATATGGTCTTGGTGGAAAGGCTTCAACTAATGGTGATGTGTACAGTTTTGGAATCCTACTTCTAGAGATATTCATAGCCAAAAAACCAACTGATGAAATGTTCAAAGAAGGACTAAGCTTGAACAAATTTGTATCAGACATGGATGAGAAGCAACTGCTGAAGGTTGTTGATCAAAGGCTTATCAGTGGCGATTGTCATAGTAGTAGTGCGACTGGCGACAACAGCTATAGTGACGGTAACACAGATTGGGTGCACAAAACTGAGGAGTGCATAGCTGCTGCAATGAGAGTTGGCTTGTCATGTGTAGCACATCATCCGAAAGAACGATGGACAATGAGAGAAGTCGTATCAAAATTGCATGGAATTAAGCAGTCTTTACTAGGCTTGTGA 2592 0.3681 MTHILFNLLLCFLLHNFHVIICNNSTTDKDILLSFKLQVTDPNNALSSWRQDSNHCTWYGVNCSKLDQRVQSLTLSGLSLTGKLPSNLSNLTYLNSLDLSNNSFDGQIPFQFSHLSLLNVIKLPYNNLSGTLPPQLGQLHNLQILDFSVNNLTGKIPSTFGNLFSLKNLSLKRNMFFGEIPSELGNLHNLSRLQLSQNNFTGEIPTSFFFNLSSLDFLSLTRNNLSGILPQKFGDYFPNLRTLTLATNRFEGVIPNSISNLSHLQIIDLANNRFHGPIPLFTNFKNLTYLVLSNNLLTSTTALNFQFFNSLRNSTQLEILMVNDNNLAGELPNSVAYLSSNLQQFYVDHNKLNGTIPKGMKKFQNLTSLSFEHNYFTGELPLELGTLKKLEQILIYQNRLSGEIPDIFGNFTNLFILALGNNQFSGRIPMSIGECEKLNILDLEMNNFVGVIPMEIFQLSDLTALYLHGNSLNGSLPPVSNMEQLGIMYVSNNMLSGNIPEIKANGLKMLLMEGNKFSGSIPISLGDLASLETLDLSSNNLTGKKKKRNILLPIILGIIGTTVLFASMIYLLWRLMFLKKKHKEEKRTLSLIPLKGLPQNITYGDIRRATNNFSAANMVGKGGFGSVYKGVFNISTCESQTTTLAVKILDLQQSKASKSFNAECETLKNVRHRNLVKVITSCSSTDYKGDEFKALVLQFMPNDFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTNGDVYSFGILLLEIFIAKKPTDEMFKEGLSLNKFVSDMDEKQLLKVVDQRLISGDCHSSSATGDNSYSDGNTDWVHKTEECIAAAMRVGLSCVAHHPKERWTMREVVSKLHGIKQSLLGL 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04212 863 Gene3D Ribonuclease Inhibitor 238 453 IPR032675 -
Trre6g04212 863 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 310 548 - -
Trre6g04212 863 PRINTS Leucine-rich repeat signature 528 541 - -
Trre6g04212 863 PRINTS Leucine-rich repeat signature 94 107 - -
Trre6g04212 863 Gene3D Phosphorylase Kinase; domain 1 595 695 - -
Trre6g04212 863 ProSiteProfiles Protein kinase domain profile. 507 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04212 863 Gene3D Ribonuclease Inhibitor 25 177 IPR032675 -
Trre6g04212 863 ProSiteProfiles Leucine-rich repeat profile. 286 307 IPR001611 GO:0005515
Trre6g04212 863 SMART LRR_typ_2 139 162 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 528 553 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 187 211 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 284 307 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 459 483 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 237 260 IPR003591 -
Trre6g04212 863 SMART LRR_typ_2 212 235 IPR003591 -
Trre6g04212 863 Gene3D Ribonuclease Inhibitor 178 237 IPR032675 -
Trre6g04212 863 SUPERFAMILY L domain-like 309 542 - -
Trre6g04212 863 Gene3D Transferase(Phosphotransferase) domain 1 696 858 - -
Trre6g04212 863 Gene3D Ribonuclease Inhibitor 454 551 IPR032675 -
Trre6g04212 863 SUPERFAMILY L domain-like 47 377 - -
Trre6g04212 863 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 207 301 - -
Trre6g04212 863 Pfam Leucine rich repeat 238 297 IPR001611 GO:0005515
Trre6g04212 863 ProSitePatterns Protein kinases ATP-binding region signature. 619 647 IPR017441 GO:0005524
Trre6g04212 863 Pfam Protein tyrosine and serine/threonine kinase 703 770 IPR001245 GO:0004672|GO:0006468
Trre6g04212 863 Pfam Protein tyrosine and serine/threonine kinase 616 700 IPR001245 GO:0004672|GO:0006468
Trre6g04212 863 FunFam LRR receptor-like serine/threonine-protein kinase EFR 584 699 - -
Trre6g04212 863 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 184 - -
Trre6g04212 863 SUPERFAMILY Protein kinase-like (PK-like) 596 857 IPR011009 -
Trre6g04212 863 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre6g04212 863 PANTHER OS04G0122200 PROTEIN 703 857 - -
Trre6g04212 863 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04212 Trre-Chr6 44975251 44978339 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04212 702 858 Receptor kinase-like Gene Family AT3G47570 36.875 5.76e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04212 PK_Tyr_Ser-Thr 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04212 - - mtr:11428205 826.239