Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04209 ATGCTCTATCAAGTTGGAGACAAGATTCTAATCACTGTACTTGGTTTGGTGTCAACTGTTCCAAAGTTGGTGAAAGAGTTCAATCTCTCACTTTATCAGGACTTAGCCTCTCAGGTAAAGTCCCTTCATCATTTGGCAAACTCTTTTCCCTCAAAAAACCTTTACTTGGCAAGGAACAGGTTTGTTGGTGAGATTCCAAGTGAAATTGGTAAACTCCACAATCTTTCAATACTTCAACTCTCAGAAAACAATTTTACTGGCAAGTTTCCTTTTTCTACCTTCTCCAACTTATCTTCCATAGTTGTCTTATCCCTTACAAATAACAATCTATCAGGCGAGTTGCCGCAAAATTTCGGCAACACGTTTCCGAATTTAAGGCAACTTACTTTGGCAACCAATAGATTTGAAGGGGTGATTCCTAATTCTATATCCAATTCATCACATCTTGACAAAATTGATTTATCTGACAATAGGTTTCATGGGCCAATACCTCTTTTCAACAACTTGAAAAACCTCACTTATTTGACTCTTGGTCATAACTTTCTCACTTCCACCACATCCTTGAATTTTCAGTTCTTTGATTCTCTTAGAAACTCCACTCTGTTGGAAATTCTTAAGGTGAATGATAACTACTTGGCTGGGGAACTTCCAAATTCTATTGCCTATCTTTCAGGCAATCTACAACAGTTATGTGTTGCTAACAATCAGCTAAATGGAAGCATTCCTGAGGGAATGAAGAAATTTCAAAATCTCGCATCCCTCTCTTTTGAACAGAATTATTTCACCGGGGAGTTGCCATTAGAATTAGGAACACTCAAGAAACTGGAAAATGAAGATATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCTGAGAAACATAGCAGCACTTTAGAACTAAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTGGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTAGAATCCTACTTCTAGAGATGTTCATAGCCAAAAAGCCAACTGATGAAATTTTCAAAGAAGGATTAAGCTTGAACAAATTTGTATCAGACATGGATGAGAAGCAACTGCTGAATGTTGTTGATCAAAGGCTTATCAGTGGCGATTGTCATAGCAGTTGTTTGACTGGCGACAACGGTTATAGTGACGGCAACACAGATTGGATGCACAAAGCTGAGGAGTGCATAGCTGCTGCAATGAGAGTTGGCTTGTCATGTGTAGCACATCATCCGAATAATCGGTGGACAATGAGAGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATTCTAGGCTTGTGA 1341 0.3922 MLYQVGDKILITVLGLVSTVPKLVKEFNLSLYQDLASQVKSLHHLANSFPSKNLYLARNRFVGEIPSEIGKLHNLSILQLSENNFTGKFPFSTFSNLSSIVVLSLTNNNLSGELPQNFGNTFPNLRQLTLATNRFEGVIPNSISNSSHLDKIDLSDNRFHGPIPLFNNLKNLTYLTLGHNFLTSTTSLNFQFFDSLRNSTLLEILKVNDNYLAGELPNSIAYLSGNLQQLCVANNQLNGSIPEGMKKFQNLASLSFEQNYFTGELPLELGTLKKLENEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFRILLLEMFIAKKPTDEIFKEGLSLNKFVSDMDEKQLLNVVDQRLISGDCHSSCLTGDNGYSDGNTDWMHKAEECIAAAMRVGLSCVAHHPNNRWTMREAVSKLHGIKQSILGL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04209 446 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 43 120 - -
Trre6g04209 446 Gene3D Transferase(Phosphotransferase) domain 1 278 443 - -
Trre6g04209 446 Gene3D Ribonuclease Inhibitor 16 277 IPR032675 -
Trre6g04209 446 Pfam Protein tyrosine and serine/threonine kinase 277 351 IPR001245 GO:0004672|GO:0006468
Trre6g04209 446 ProSiteProfiles Leucine-rich repeat profile. 171 192 IPR001611 GO:0005515
Trre6g04209 446 SUPERFAMILY RNI-like 52 276 - -
Trre6g04209 446 ProSiteProfiles Protein kinase domain profile. 80 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04209 446 SUPERFAMILY Protein kinase-like (PK-like) 277 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04209 Trre-Chr6 44949004 44951977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04209 275 441 Receptor kinase-like Gene Family AT3G47570 37.059 4.49e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04209 PK_Tyr_Ser-Thr 3.9e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04209 - - cam:101497760 357.451