Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04208 ATGGTCCATATAAGACTTATTTTGCTCCTATGTTTTCTACTTCATAATTTTCATGTCATTGTTTGCAACAATAGCACCACAGACAAAGATATCCTTCTATCTTTCAAATTACAAGTAACTGATCCAAACAATGCTCTATCAAGTTGGAGACAAGATTCTAATCACTGTACTTGGTTTGGTGTCAACTGTTCCAAAGTTGGTGAAAGAGTTCAATCTCTCACTTTATCAGGACTTAGCCTCTCAGGTAAAATACCTTCTGACCTCTCCAACCTCACTTACCTTCATTCACTTGACCTTTCCCAAAACAATTTTTATGGCCAAATTCCCTTCCAATTTTCTCATCTCTCACTCCTCAATGTCATTCATTTACCTTACAACAATCTCTCCGGTACACTTCCACCTCAATTGGGCCAACTCCATCGTCTTCAAAGTTTAGACTTTTCTGTCAATAATCTCACAGGTAAAGTCCCTTCATCATTTGGCAAACTCTTTTCCCTCAAAAAACCTTTACTTGGCAAGGAACAGTTTCCTTTTTCTACCTTCTCCAACTTATCTTCCATAGTTGTCTTATCCCTTACAAATAACAATCTATCAGGCGAGTTGCCGCAAAATTTCGGCAACACGTTTCCGAATTTAAGGCAACTTACTTTGGCAACCAATAGATTTGAAGGGGTGATTCCTAATTCTATATCCAATTCATCACATCTTGACAAAATTGATTTATCTGACAATAGGTTTCATGGGCCAATACCTCTTTTCAACAACTTGAAAAACCTCACTTATTTGACTCTTGGTCATAACTTTCTCACTTCCACCACATCCTTGAATTTTCAGTTCTTTGATTCTCTTAGAAACTCCACTCTGTTGGAAATTCTTAAGGTGAATGATAACTACTTGGCTGGGGAACTTCCAAATTCTATTGCCTATCTTTCAGGCAATCTACAACAGTTATGTGTTGCTAACAATCAGCTAAATGGAAGCATTCCTGAGGGAATGAAGAAATTTCAAAATCTCGCATCCCTCTCTTTTGAACAGAATTATTTCACCGGGGAGTTGCCATTAGAATTAGGAACACTCAAGAAACTGGAAAGTTTATCGATGTACGAAAATATATTGTCTGGTGAAATTCCAGACATGTTTGGCAATTTAACAAATCTGTATAATCTTGATATATGGAACAACCAGTTCTCAGGTAAAATTCCCGCGAGTATTAGACAATGCAAGAGATTGACTACTCTTGACTTGGGAATGAATAAGCTAGTTGGTACCATACCAATCGAGATTTTTCAACTCACTGGTTTGATAACTTTGAACTTACAAGGAAACTCTTTGAATGGTTCGCTTCCTCCTGAATTCGACAAAATTGAGCAGCTAGAGACCATGGTTGTTTCGGACAACAAACTGTCGGGGAACATTCCTAAAATCGAAGTATACGGCTTGAAGACGCTTGTGTTGGCAAGAAACAAATTTAATGGCTCAATTCCAAATAGTCTAGGGGATTTAGCATCCCTTGAGAATTTGGATCTATCATCAAACAATCTAACTGGCGTTTTTATGAACCTAAGCCAGGTTGATCTCCAAGGTAACAACAAACTATGTGGCCTTAACAATCAAGTTATGCACAAGTTTGGAGTCACTTTGTGCGTTGCAGGTAAGAAAAACAAGAGAAACATTTTACTTCCAATCACACTCGGGATTATAGGCGCGGCTGTTTTGTTCGCTTCAATGATCTATCTACTGTGGCGGCTAATGTCAAAGAAGAAACACAAGGAGGAAAAAAGAACTTTGACATCAACTCCTCTAAAGGGGATTCCTCAAAATATAACCTATGGTGATATTAGGCTTGCTACAAACAATTTTTCAGCTGCAAATTTAGTTGGAAAAGGAGGCTTTGGCTCTGTTTACAAGGGTGTGTTCGACACCAGCAGTTACGAAAGTCAAACCGCGACACTTGCTGTTAAAGTTCTTGACCTGCAACAAAGCAAAGCCTCTAAGAGTTTTAGTGCAGAATGTGAAGCTTTGAAAAACGTTAGGCATCGGAATCTTGTCAAGGTGATCACTTCTTGCTCCAGCATTGATTACAAGGGGGACGATTTTAAGGCTCTTGTAATGCAATTCATGCCTAATGGTAATTTGGAGATGAGTTTATACCCGGAAGATCTTGAGTCGGGCTCTTCGTTAACCTTGTTGCAAAGGTTAAACATTGCCATTGATGTTGCATCTGCCATGGACTACTTGCACAATGACTGTGATCCACCAATAGTCCATTGTGATTTGAAACCTGCCAATGTCCTAATAGATGAAGATATGGTTGCACATGTGGCAGATTTTGGATTGGCAAGGTTTCTCTCTCAAAATCCATCTGAGAAACATAGCAGCACTTTAGAACTAAAGGGATCAATCGGCTATATCGCCCCAGAATATGGTCTGGGTGGAAAGGCTTCAACTAGTGGTGATGTGTACAGTTTTAGAATCCTACTTCTAGAGATGTTCATAGCCAAAAAGCCAACTGATGAAATTTTCAAAGAAGGATTAAGCTTGAACAAATTTGTATCAGACATGGATGAGAAGCAACTGCTGAATGTTGTTGATCAAAGGCTTATCAGTGGCGATTGTCATAGCAGTTGTTTGACTGGCGACAACGGTTATAGTGACGGCAACACAGATTGGATGCACAAAGCTGAGGAGTGCATAGCTGCTGCAATGAGAGTTGGCTTGTCATGTGTAGCACATCATCCGAATAATCGGTGGACAATGAGAGAAGCCGTATCAAAATTGCATGGAATTAAGCAGTCTATTCTAGGCTTGTGA 2811 0.3931 MVHIRLILLLCFLLHNFHVIVCNNSTTDKDILLSFKLQVTDPNNALSSWRQDSNHCTWFGVNCSKVGERVQSLTLSGLSLSGKIPSDLSNLTYLHSLDLSQNNFYGQIPFQFSHLSLLNVIHLPYNNLSGTLPPQLGQLHRLQSLDFSVNNLTGKVPSSFGKLFSLKKPLLGKEQFPFSTFSNLSSIVVLSLTNNNLSGELPQNFGNTFPNLRQLTLATNRFEGVIPNSISNSSHLDKIDLSDNRFHGPIPLFNNLKNLTYLTLGHNFLTSTTSLNFQFFDSLRNSTLLEILKVNDNYLAGELPNSIAYLSGNLQQLCVANNQLNGSIPEGMKKFQNLASLSFEQNYFTGELPLELGTLKKLESLSMYENILSGEIPDMFGNLTNLYNLDIWNNQFSGKIPASIRQCKRLTTLDLGMNKLVGTIPIEIFQLTGLITLNLQGNSLNGSLPPEFDKIEQLETMVVSDNKLSGNIPKIEVYGLKTLVLARNKFNGSIPNSLGDLASLENLDLSSNNLTGVFMNLSQVDLQGNNKLCGLNNQVMHKFGVTLCVAGKKNKRNILLPITLGIIGAAVLFASMIYLLWRLMSKKKHKEEKRTLTSTPLKGIPQNITYGDIRLATNNFSAANLVGKGGFGSVYKGVFDTSSYESQTATLAVKVLDLQQSKASKSFSAECEALKNVRHRNLVKVITSCSSIDYKGDDFKALVMQFMPNGNLEMSLYPEDLESGSSLTLLQRLNIAIDVASAMDYLHNDCDPPIVHCDLKPANVLIDEDMVAHVADFGLARFLSQNPSEKHSSTLELKGSIGYIAPEYGLGGKASTSGDVYSFRILLLEMFIAKKPTDEIFKEGLSLNKFVSDMDEKQLLNVVDQRLISGDCHSSCLTGDNGYSDGNTDWMHKAEECIAAAMRVGLSCVAHHPNNRWTMREAVSKLHGIKQSILGL 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04208 936 FunFam LRR receptor-like serine/threonine-protein kinase EFR 590 706 - -
Trre6g04208 936 Gene3D Ribonuclease Inhibitor 176 542 IPR032675 -
Trre6g04208 936 ProSiteProfiles Protein kinase domain profile. 620 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04208 936 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 707 935 - -
Trre6g04208 936 SMART LRR_sd22_2 256 277 - -
Trre6g04208 936 SMART LRR_sd22_2 359 385 - -
Trre6g04208 936 SMART LRR_sd22_2 501 523 - -
Trre6g04208 936 SMART LRR_sd22_2 311 340 - -
Trre6g04208 936 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 282 532 - -
Trre6g04208 936 Gene3D Transferase(Phosphotransferase) domain 1 707 933 - -
Trre6g04208 936 SMART LRR_typ_2 431 454 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 209 232 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 256 282 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 501 524 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 139 162 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 184 207 IPR003591 -
Trre6g04208 936 SMART LRR_typ_2 383 407 IPR003591 -
Trre6g04208 936 FunFam Leucine-rich repeat receptor-like protein kinase 25 179 - -
Trre6g04208 936 ProSiteProfiles Leucine-rich repeat profile. 258 279 IPR001611 GO:0005515
Trre6g04208 936 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Trre6g04208 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 754 766 IPR008271 GO:0004672|GO:0006468
Trre6g04208 936 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Trre6g04208 936 SUPERFAMILY RNI-like 72 420 - -
Trre6g04208 936 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515
Trre6g04208 936 Gene3D Phosphorylase Kinase; domain 1 602 706 - -
Trre6g04208 936 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 273 - -
Trre6g04208 936 SUPERFAMILY L domain-like 389 537 - -
Trre6g04208 936 ProSitePatterns Protein kinases ATP-binding region signature. 626 654 IPR017441 GO:0005524
Trre6g04208 936 Gene3D Ribonuclease Inhibitor 25 175 IPR032675 -
Trre6g04208 936 PANTHER RECEPTOR-LIKE PROTEIN 55 282 931 - -
Trre6g04208 936 Pfam Protein tyrosine and serine/threonine kinase 624 841 IPR001245 GO:0004672|GO:0006468
Trre6g04208 936 SUPERFAMILY Protein kinase-like (PK-like) 596 926 IPR011009 -
Trre6g04208 936 SMART serkin_6 620 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04208 Trre-Chr6 44949004 44952107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04208 27 931 Receptor kinase-like Gene Family AT3G47570 38.500 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre6g04208 PK_Tyr_Ser-Thr 3.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04208 - - mtr:11428205 1360.9