Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04207 ATGAGTGAGTTTCACGTTCAAGACAAAGAACCTAACAAAAAAACCAACAACAACAACAGTAGTAGTAGTAGTAGTGTTCTTCTTGGGTCGGGTGTGAAGTTGCAGTGTTTTGAAGGATTCTCTAATAAGAACATGATGTTACAGCAGAATCATCACCACCATTCATTTTCTATCGATCATCATCATGATTCTTCTGCTGTTCCTGATGGTTATGGTCCCACAACCTACAACATCTCTTTTGTTGGTGATTCTGATTCCTCTGCTCTAGATGCTACCACCACCATTGATAATGGCGGTGTACCTTTAAATTTGCAGCCTTTTCACAACATTTCTGCTACCACAACAACTCTCAAACCCTCAGCAGTTGGAATGGCGGCTTCATTAGGATACCCTTTCACAATTTCACAATGGAAAGAGCTTGAAAGACAAGCTATGATTTACAAGTATTTGATGGCTTCTCTTCCTGTACCTTCTCATCTTCTCTCATTGGATGGTGGTTTCAATCTGAGGTTATCATCAAGAAATAGAAGTAATAATGATCCAGAAGCAGGTAGGTGCAAAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCTAATAACAAGTATTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCAAACCAATGACAATAATCATCATCAGATCAAAAGGGCTCGTTGTGATTCTAATCCTTTTTCTGTTCCTGATGTTACTTTGGCTATGCCTAATCCATCTACAAGGAAATATGGTGGATCTACTGCTTTTCATCCTTATCATCAATCTTCCCTTTCTTTGGATAATAATAGCTTTGGTATCAAAGCTCCAAACTTTGACTTTTCAAATAAGCAGCCAAGGGGCTTGGAATGGATGCTAAATGGAGATCCAATATGTCTTGGTGCTTCTAACTCAGGATGGCACTCTCTAATGCATAACAACAAACTTGGATTAACCAATGAAAGTTCCTATCAAAATAACACTGAATCTCAGTATCTGAATTCATTTCTTCTATATACTACTTCTGAACTTTCTCAACATCCAATGCAAACTCTTCAATCTGAGAAACCAAGAGGTTTTACTTTCATTGATGCTTGGTCTAATGCAGAAACAGTTGAAAACAATGCCAACACAAATAACAATGTTTCTGCTACATCAATTGGTAAATTATCTCTTTCATCTCTTGATTTATCAATGGGAGGTCCATTAGCTGAAGTTTTGAGGCCAAGTAATGTAACTTCCATAAGTGATGCAACAAACTCTAATTCATCTTCACCTGTTGGAACAAACCATGTTGAATCTGTTGGAAATTCAGGAGGAACAGGAATGTTTTCATCTCCTTCTGGTGTTTTGCATAATAAAACACTTGCTTCTTTTTCTGATAGTAGTGGTAATAGTAGTCCAACTATTGCTTCATCAAGGGTCAATTCTGAAATTGCCTTACTCAACAAGTTTGATCAAATTTCTTATGTAAATTAA 1509 0.3738 MSEFHVQDKEPNKKTNNNNSSSSSSVLLGSGVKLQCFEGFSNKNMMLQQNHHHHSFSIDHHHDSSAVPDGYGPTTYNISFVGDSDSSALDATTTIDNGGVPLNLQPFHNISATTTTLKPSAVGMAASLGYPFTISQWKELERQAMIYKYLMASLPVPSHLLSLDGGFNLRLSSRNRSNNDPEAGRCKRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELQTNDNNHHQIKRARCDSNPFSVPDVTLAMPNPSTRKYGGSTAFHPYHQSSLSLDNNSFGIKAPNFDFSNKQPRGLEWMLNGDPICLGASNSGWHSLMHNNKLGLTNESSYQNNTESQYLNSFLLYTTSELSQHPMQTLQSEKPRGFTFIDAWSNAETVENNANTNNNVSATSIGKLSLSSLDLSMGGPLAEVLRPSNVTSISDATNSNSSSPVGTNHVESVGNSGGTGMFSSPSGVLHNKTLASFSDSSGNSSPTIASSRVNSEIALLNKFDQISYVN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04207 502 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g04207 502 ProSiteProfiles QLQ domain profile. 131 166 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04207 502 MobiDBLite consensus disorder prediction 425 457 - -
Trre6g04207 502 Pfam WRC 181 223 IPR014977 -
Trre6g04207 502 PANTHER GROWTH-REGULATING FACTOR 5 124 401 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre6g04207 502 Pfam QLQ 131 161 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04207 502 SMART QLQ_2 130 166 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04207 502 ProSiteProfiles WRC domain profile. 180 224 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04207 Trre-Chr6 44942428 44944816 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04207 131 229 GRF Transcription Factor Family AT4G37740 55.172 5.39e-34 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre6g04207 WRC 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04207 - - mtr:11444759 633.254