Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04206 ATGAGTGAGTTTCACGTTCAAGACAAAGAACCTAACAAAAAAACCAACAACAACAACAGTAGTAGTAGTAGTAGTGTTCTTCTTGGGTCGGGTGTGAAGTTGCAGTGTTTTGAAGGATTCTCTAATAAGAACATGATGTTACAGCAGAATCATCACCACCATTCATTTTCTATCGATCATCATCATGATTCTTCTGCTGTTCCTGATGGTTATGGTCCCACAACCTACAACATCTCTTTTGTTGGTGATTCTGATTCCTCTGCTCTAGATGCTACCACCACCATTGATAATGGCGGTGTACCTTTAAATTTGCAGCCTTTTCACAACATTTCTGCTACCACAACAACTCTCAAACCCTCAGTTACAGCAGTTGGAATGGCGGCTTCATTAGGATACCCTTTCACAATTTCACAATGGAAAGAGCTTGAAAGACAAGCTATGATTTACAAGTATTTGATGGCTTCTCTTCCTGTACCTTCTCATCTTCTCTCATTGGATGGTGGTTTCAATCTGAGGTTATCATCAAGAAATAGAAGTAATAATGATCCAGAAGCAGGTAGGTGCAAAAGAACAGATGGTAAAAAATGGAGATGTTCAAGAGATGTGGCTCCTAATAACAAGTATTGTGAAAGACATATGCATAGAGGTCGTCCCCGTTCAAGAAAGCCTGTGGAACTTCAAACCAATGACAATAATCATCATCAGATCAAAAGGGCTCGTTGTGATTCTAATCCTTTTTCTGTTCCTGATGTTACTTTGGCTATGCCTAATCCATCTACAAGGAAATATGGTGGATCTACTGCTTTTCATCCTTATCATCAATCTTCCCTTTCTTTGGATAATAATAGCTTTGGTATCAAAGCTCCAAACTTTGACTTTTCAAATAAGCAGCCAAGGGGCTTGGAATGGATGCTAAATGGAGATCCAATATGTCTTGGTGCTTCTAACTCAGGATGGCACTCTCTAATGCATAACAACAAACTTGGATTAACCAATGAAAGTTCCTATCAAAATAACACTGAATCTCAGTATCTGAATTCATTTCTTCTATATACTACTTCTGAACTTTCTCAACATCCAATGCAAACTCTTCAATCTGAGAAACCAAGAGGTTTTACTTTCATTGATGCTTGGTCTAATGCAGAAACAGTTGAAAACAATGCCAACACAAATAACAATGTTTCTGCTACATCAATTGGTAAATTATCTCTTTCATCTCTTGATTTATCAATGGGAGGTCCATTAGCTGAAGTTTTGAGGCCAAGTAATGTAACTTCCATAAGTGATGCAACAAACTCTAATTCATCTTCACCTGTTGGAACAAACCATGTTGAATCTGTTGGAAATTCAGGAGGAACAGGAATGTTTTCATCTCCTTCTGGTGTTTTGCATAATAAAACACTTGCTTCTTTTTCTGATAGTAGTGGTAATAGTAGTCCAACTATTGCTTCATCAAGGGTCAATTCTGAAATTGCCTTACTCAACAAGTTTGATCAAATTTCTTATGTAAATTAA 1515 0.3736 MSEFHVQDKEPNKKTNNNNSSSSSSVLLGSGVKLQCFEGFSNKNMMLQQNHHHHSFSIDHHHDSSAVPDGYGPTTYNISFVGDSDSSALDATTTIDNGGVPLNLQPFHNISATTTTLKPSVTAVGMAASLGYPFTISQWKELERQAMIYKYLMASLPVPSHLLSLDGGFNLRLSSRNRSNNDPEAGRCKRTDGKKWRCSRDVAPNNKYCERHMHRGRPRSRKPVELQTNDNNHHQIKRARCDSNPFSVPDVTLAMPNPSTRKYGGSTAFHPYHQSSLSLDNNSFGIKAPNFDFSNKQPRGLEWMLNGDPICLGASNSGWHSLMHNNKLGLTNESSYQNNTESQYLNSFLLYTTSELSQHPMQTLQSEKPRGFTFIDAWSNAETVENNANTNNNVSATSIGKLSLSSLDLSMGGPLAEVLRPSNVTSISDATNSNSSSPVGTNHVESVGNSGGTGMFSSPSGVLHNKTLASFSDSSGNSSPTIASSRVNSEIALLNKFDQISYVN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04206 504 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g04206 504 SMART QLQ_2 132 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04206 504 MobiDBLite consensus disorder prediction 427 459 - -
Trre6g04206 504 PANTHER GROWTH-REGULATING FACTOR 5 106 403 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre6g04206 504 Pfam QLQ 133 163 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04206 504 Pfam WRC 183 225 IPR014977 -
Trre6g04206 504 ProSiteProfiles QLQ domain profile. 133 168 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre6g04206 504 ProSiteProfiles WRC domain profile. 182 226 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04206 Trre-Chr6 44942428 44944816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04206 133 231 GRF Transcription Factor Family AT4G37740 55.172 5.38e-34 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre6g04206 WRC 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04206 - - mtr:11444759 632.484