Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04199 ATGGGTCATTGCTGCAGCAAAATTGCTGTCGACAACGAAACAATCGCCACCGATCACAACAACAACAACCATAAACCACCTAATCACGCTCCATCACCGCTTTCTCAACCTATTTCCAGCGTCAGCGATGCTACTCCAGGAAGACAAACTCCGGCGACATCGTTTTCCACAAGTCCTTTCAATAGTCCTCTTCCTGCAGGTGTGATGCCTTCTCCGGCTACTAAGACTCCAGGAAGGAAATTCAGGTGGCCACTTCCTCCACCGTCTCCGGCAAAGCCGATTATGGCGGCTTTGATGAGACGACAGGGGAAGACTAAACCGAAAGATGGACCTATACCGGAGGAACAAGGAGGAGAAGGTGGTGGAGAAGGAGAGAGAACGTTGGATAAGAGCTTTGGTTATGGGAAGAATTTTGGGGCGAAATTTGAGCTTGGTAAGGAAGTTGGTCGAGGGCATTTTGGTCATACTTGTTGGGCTAAAGGGAAGAAAGGTGAACTTAAGGGAGTATCAGTTGCTGTGAAAATCATAACCAAAGCTAAGATGACTTCGGCAATAGCAATTGAAGATGTGAGGAGGGAGGTGAAAATGTTGAAGGCCTTATCTGGACATAGGAATTTGGTCAAGTTTTATGATGCATTTGAGGATGCGAACAACGTCTACATTGTGATGGAGTTGTGTGAGGGCGGAGAATTACTGGACAGAATTCTAGATAGAGGTGGAAGATACACAGAGGATGATGCTAAAGTTATTCTTCTACAAATTCTGAATGTAGTTGCCTTTTGTCATCTTCAGGGAGTTGTTCATCGCGATCTAAAACCAGAGAATTTTCTTTTTGTCTCAAAAGATGAGGATGCTGTTTTGAAAGTTATTGACTTTGGTCTATCTGATTTTGTTAGGCCAGATCAACGCCTCAATGATATTGTTGGTAGTGCCTACTATGTTGCACCTGAAGTGCTCCATAGATCTTATAGTGTTGAAGGAGACTTATGGAGTATTGGAGTTATAACTTACATATTGTTATGTGGAAGTAGACCGTTTTGGGCACGTTCTGAATCAGGAATCTTCCGGTCTGTGTTAAGAGCAAATCCTAACTTTGATGATTCACCTTGGCCATCAATATCACCAGAAGCTAAAGACTTCGTGAAGAGACTTTTGAACAAAGACCACAGGAAAAGAATGACTGCTGCTCAAGCTCTATCTCACCCATGGTTGAGAGATGAAAAAAATGCCATTCCTTTAGATATTTTGATTTACAAGTTAGTCAAGTCATATGTGCGTGCCTCACCTTTGAAGCGTGCGGCGTTGAAGGCTCTCTCAAAAGCATTGCCAGATGATGATCTTACCTACCTTAGAGCACAATTTAGCCTCTTGGAACCTAGAGATGGTTTTGTTTCGCTGGAGAATTTCAGAGTTGCTCTCATGAAAAATGCAACTGATGCCATGAAGGAAGCAAGGGTCCCTGACATTCTAAATTTGATGGATCCACTCTCCTATAAAAGATTGGACTTCGAAGAGTTTTGCGCTGCTGCAATCAGTGTATACCAGCTGGAAGTTCATCCAGATTGGGATAAAATTGCCACTGCAGCTTTTGATTATTTTGACGAGGAAGGGAACCGTGTCATTTCACTCGAGGAGTTGGCACAGGAGATGAATTTGGGTCCTTCTGCTTACTCTTCAATGGGTGATTGGATCAGAAAATCTGATGGAAAACTCAGCTTGGTTGGATATACAAAGTATTTGCATGGTGTCACAATTCGTTCAAATACAAGACACAGATAG 1779 0.4306 MGHCCSKIAVDNETIATDHNNNNHKPPNHAPSPLSQPISSVSDATPGRQTPATSFSTSPFNSPLPAGVMPSPATKTPGRKFRWPLPPPSPAKPIMAALMRRQGKTKPKDGPIPEEQGGEGGGEGERTLDKSFGYGKNFGAKFELGKEVGRGHFGHTCWAKGKKGELKGVSVAVKIITKAKMTSAIAIEDVRREVKMLKALSGHRNLVKFYDAFEDANNVYIVMELCEGGELLDRILDRGGRYTEDDAKVILLQILNVVAFCHLQGVVHRDLKPENFLFVSKDEDAVLKVIDFGLSDFVRPDQRLNDIVGSAYYVAPEVLHRSYSVEGDLWSIGVITYILLCGSRPFWARSESGIFRSVLRANPNFDDSPWPSISPEAKDFVKRLLNKDHRKRMTAAQALSHPWLRDEKNAIPLDILIYKLVKSYVRASPLKRAALKALSKALPDDDLTYLRAQFSLLEPRDGFVSLENFRVALMKNATDAMKEARVPDILNLMDPLSYKRLDFEEFCAAAISVYQLEVHPDWDKIATAAFDYFDEEGNRVISLEELAQEMNLGPSAYSSMGDWIRKSDGKLSLVGYTKYLHGVTIRSNTRHR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04199 592 ProSitePatterns Protein kinases ATP-binding region signature. 148 174 IPR017441 GO:0005524
Trre6g04199 592 FunFam CDPK-related kinase 3 134 306 - -
Trre6g04199 592 Gene3D Transferase(Phosphotransferase) domain 1 232 423 - -
Trre6g04199 592 MobiDBLite consensus disorder prediction 15 71 - -
Trre6g04199 592 Pfam Protein kinase domain 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04199 592 FunFam Calcium-dependent protein kinase SK5 314 409 - -
Trre6g04199 592 Gene3D - 443 511 - -
Trre6g04199 592 SUPERFAMILY EF-hand 437 581 IPR011992 -
Trre6g04199 592 MobiDBLite consensus disorder prediction 15 64 - -
Trre6g04199 592 MobiDBLite consensus disorder prediction 102 128 - -
Trre6g04199 592 FunFam CDPK-related kinase 1 135 230 - -
Trre6g04199 592 FunFam CDPK-related kinase 1 440 511 - -
Trre6g04199 592 SMART serkin_6 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04199 592 Gene3D - 424 552 - -
Trre6g04199 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Trre6g04199 592 MobiDBLite consensus disorder prediction 101 128 - -
Trre6g04199 592 SUPERFAMILY Protein kinase-like (PK-like) 141 428 IPR011009 -
Trre6g04199 592 PANTHER SERINE/THREONINE-PROTEIN KINASE 126 565 - -
Trre6g04199 592 CDD STKc_CAMK 141 403 - -
Trre6g04199 592 ProSiteProfiles Protein kinase domain profile. 142 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04199 592 Gene3D Phosphorylase Kinase; domain 1 136 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04199 Trre-Chr6 44749639 44756767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04199 1 591 EF-hand Containing Proteins AT3G50530 57.143 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre6g04199 Pkinase 8.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04199 - - gmx:100803631 995.342