Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04196 ATGATGGAGGAAGAAGAGAATATTCATGAAGGATATAAAGGAAAAAATGTTGAAATTAGTAGCATGAGTTGCTTAGAGACATCAAGGAAGAAAAACAAGAAGGTAGAAAATAAGAGAAGGTTTAGTGATGAACAAATAAGATCACTAGAATGTATATTTGAGTCAGAATCAAAGTTGGAACCAAGGAAGAAGATTCAACTTGCAAGAGATCTTGGTTTGCAACCTAGACAAGTTGCTATATGGTTTCAAAATAGAAGAGCTAGGTGGAAATCAAAAAGGATTGAACAAGAATATAGAAAACTCAAAGATGAATATGATCATTTAGCTTCTAAGTTTCAGTCCCTTAAAGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGATTGTGGTGGAAGGGAAGCTAAGGAACATAGCACAGAAGATGGTGGTTCAGGAAATGGATACAGCAATTGCAGGGTTGAAACAAAGAAAAGGTTTTCAAATGAGGGTTTAGAGGATAGAATGGTAATTTACTCAGATGATCAAAATGAAAGAAGCACTACAAGGACTGAAGACAGAGGAAATCAAGTTTTGAGAAATGATGATCATGAAGAAATTCCATTGACAACACTTGAAAAATGGTACAATGTTGATCCAAGTAGTATATTAGACCAATCATGTAACAGTTCTCAATGGTTGGATTTTTGGACTTGA 723 0.3472 MMEEEENIHEGYKGKNVEISSMSCLETSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKIQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDHLASKFQSLKEEKESLQSEVQKLSYMVETSHDCGGREAKEHSTEDGGSGNGYSNCRVETKKRFSNEGLEDRMVIYSDDQNERSTTRTEDRGNQVLRNDDHEEIPLTTLEKWYNVDPSSILDQSCNSSQWLDFWT 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04196 240 MobiDBLite consensus disorder prediction 139 161 - -
Trre6g04196 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 182 IPR045224 GO:0003700
Trre6g04196 240 SMART HOX_1 35 96 IPR001356 GO:0003677
Trre6g04196 240 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Trre6g04196 240 CDD homeodomain 38 93 IPR001356 GO:0003677
Trre6g04196 240 MobiDBLite consensus disorder prediction 182 206 - -
Trre6g04196 240 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Trre6g04196 240 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Trre6g04196 240 FunFam Homeobox-leucine zipper protein ATHB-7 18 92 - -
Trre6g04196 240 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Trre6g04196 240 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Trre6g04196 240 Pfam Homeodomain 37 90 IPR001356 GO:0003677
Trre6g04196 240 Coils Coil 84 132 - -
Trre6g04196 240 Gene3D - 18 98 - -
Trre6g04196 240 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04196 Trre-Chr6 44690689 44691642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04196 12 240 Homeobox Transcription Factor Family AT2G46680 39.200 4.90e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre6g04196 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04196 K09338 - gmx:100499926 333.569