Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04182 ATGAAGGGTTCATCAGATACGAAGTTCCTTCAAGATATTTTGTTATACGCTGCAAGCGCTGCGTTGAGTTGCTTGGTATTGGTAACCGGTTTGCAATACTTAGACCCGAACCGTGAATCTTCGAAGAAGGCTCTTGAACATAAGAAAGAGATTGCAAAGCGTTTAGGTCGTCCCCTTATTAATACAAATGCTTATGAGGATGTAATAGCCTGTGATGTAATAAATCCTGACCACATCGACGTAGAGTTTGACTCCATCGGGGGACTGGCAACCATTAAAGAAGCTTTATTTGAGCTTGTTATTCTTCCCTTGAAGCGACCTGACTTGTTTTCGTATGGCAAACTCCTTGGGCCTCAAAAGGGGGTCCTGTTGTATGGACCCCCAGGCACTGGGAAAACAATGCTTGCCAAAGCTATTGCCAAAGAGTCAGGAGCAGTTTTCATTAATGTGAGGATATCCAACCTGATGAGCAAATGGTTCGGAGATGCTCAAAAGCTTGTGACTGCGGTATTTAGCTTGGCTCATAAGCTTCAACCTGCTATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTCAATCAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCACTACTGACCAGAATGCCCGAGTTATGGTACTTGCGGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTTTTCCTCAAGCCTTCGAAATTGGAATGCCAAACCAGAAGGAGAGGGCTGAGATATTGAAGATTATCTTAAAGGATGAGAGGGTTGAAGATAACATAGACTTCGGTTCTATAGCTAGATCATGTAAAGGTTACACTGGATCAGATCTATTTGATCTGTGCAAGAAGGCCGCCTATTTTCCTATTAGAGAACTGCTGGATTATGAGAAGAAAGGGAAACAATCTCCTGAACCTAGACCTTTGTCGCAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAACGGTTGCTGCCAATGAATACTGCAGAATGAACCAACCGTCATCATCCGGCGATTCAGGTGATTATCAAGTTCAAGCTGCAATCAATGAATTCTCTAAGCTTATGATTTCTCAAATGATTAACCTCCAATCAGATTCCCAGGATTCTTAA 1164 0.4261 MKGSSDTKFLQDILLYAASAALSCLVLVTGLQYLDPNRESSKKALEHKKEIAKRLGRPLINTNAYEDVIACDVINPDHIDVEFDSIGGLATIKEALFELVILPLKRPDLFSYGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVTAVFSLAHKLQPAIIFIDEVDSFLGQRRQSDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRFPQAFEIGMPNQKERAEILKIILKDERVEDNIDFGSIARSCKGYTGSDLFDLCKKAAYFPIRELLDYEKKGKQSPEPRPLSQLDLEKALSTSRKTTVAANEYCRMNQPSSSGDSGDYQVQAAINEFSKLMISQMINLQSDSQDS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04182 387 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Trre6g04182 387 Gene3D - 253 333 - -
Trre6g04182 387 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Trre6g04182 387 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
Trre6g04182 387 SMART AAA_5 118 258 IPR003593 GO:0016887
Trre6g04182 387 Gene3D - 80 339 IPR027417 -
Trre6g04182 387 CDD RecA-like_ATAD1 85 250 - -
Trre6g04182 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Trre6g04182 387 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 14 350 - -
Trre6g04182 387 Coils Coil 381 387 - -
Trre6g04182 387 Pfam AAA+ lid domain 274 309 IPR041569 -
Trre6g04182 387 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04182 Trre-Chr6 44566840 44572364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04182 77 325 Calmodulin-binding Proteins AT3G56690 33.992 1.83e-37 142