Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04180 ATGGGAGGTTTTTTCTTGTACGCGGCTAGGGCAGCGCTGAGTTACTGGGTATTGATACAGGGGCTCCGATATTTAGACCCGAACCGTGAATCATCGAAGAAGGCTCTTGAGCAGAAGAAAGAGATTGCAAAGCGTCTAGGACGTCCTCTCATTCAAACCAATTCTTATGAGGATGTGATAGCATGTGATGTTATAAATCCTGATCACATTAATGTGGAATTTGACTCCATTGGGGGATTGGAAAGTATTAAACAAGCTTTGTTTGAGCTTGTTATTCTACCCCTTAAGCGGCCCGACTTGTTTTCGCATGGTAAGCTGCTTGGACCACAAAAGGGGGTTTTGTTGTATGGACCTCCTGGCACTGGGAAAACTATGCTTGCAAAAGCTATTGCCAAGGAGTCTGGAGCAGTATTTATTAATGTCAAGATATCCAACCTCATGAGCAAATGGTTCGGGGATGCCCAAAAGCTTGTGGCTGCCGTATTTAGCTTGGCCGATAAGCTTCAGCCTGCTATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGTCGTACATCAGATCACGAGGCTATGTTAAACATGAAAACGGAGTTCATGGCTCTATGGGATGGATTCACCACCAACAAGAATGCTCAAGTTATGGTGCTTGCCGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTCAGGCGGCTTCCTCAAGCTTTTGAAATTGGATATCCAGACCAGAAAGAGAGGGCTGAGATATTGAAGGTTATCTTAAAGGGCGAGAGGGTTGAAGATAACATAGACTTCGGTTATATAGCTGGATTATGCAAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAGGCTGCGTATTTTCCTATTAGGGAACTACTGGATGATGAGAAGAAAGGGAAACAATCTTGTGAACCTCGACCTTTGTCACAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAATGGTTGCTGCAAATGAATACAGTAGAACGAAAGCACCGTCATCTTCAAGACAGCCATTTTCTGGCGAGTCAGGTGATTATGAGGTTCAAGCTGCTATCAAGGAAATTTCTAGGCTTATGGGTTCTCACATGATTAACATCCAATTAGAACCCCAGGATCCTTAA 1152 0.4349 MGGFFLYAARAALSYWVLIQGLRYLDPNRESSKKALEQKKEIAKRLGRPLIQTNSYEDVIACDVINPDHINVEFDSIGGLESIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVKISNLMSKWFGDAQKLVAAVFSLADKLQPAIIFIDEVDSFLGQRRTSDHEAMLNMKTEFMALWDGFTTNKNAQVMVLAATNRPSELDEAILRRLPQAFEIGYPDQKERAEILKVILKGERVEDNIDFGYIAGLCKGYTGSDLFDLCKKAAYFPIRELLDDEKKGKQSCEPRPLSQLDLEKALSTSRKTMVAANEYSRTKAPSSSRQPFSGESGDYEVQAAIKEISRLMGSHMINIQLEPQDP 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04180 383 Pfam ATPase family associated with various cellular activities (AAA) 113 242 IPR003959 GO:0005524|GO:0016887
Trre6g04180 383 Gene3D - 244 324 - -
Trre6g04180 383 CDD RecA-like_ATAD1 76 241 - -
Trre6g04180 383 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 23 334 - -
Trre6g04180 383 SMART AAA_5 109 245 IPR003593 GO:0016887
Trre6g04180 383 FunFam ATPase family AAA domain-containing protein 1 71 248 - -
Trre6g04180 383 MobiDBLite consensus disorder prediction 333 352 - -
Trre6g04180 383 Pfam AAA+ lid domain 265 300 IPR041569 -
Trre6g04180 383 ProSitePatterns AAA-protein family signature. 215 234 IPR003960 GO:0005524|GO:0016887
Trre6g04180 383 MobiDBLite consensus disorder prediction 333 354 - -
Trre6g04180 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 300 IPR027417 -
Trre6g04180 383 Gene3D - 71 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04180 Trre-Chr6 44552024 44556488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04180 72 303 Calmodulin-binding Proteins AT3G56690 34.874 5.10e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04180 K22530 - gmx:100796908 634.409