Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04161 ATGTCTCCTTCTCAAGCATATTGTTTTTTGAACAACCTTGCCAATGCGACAAATGAGAGTAGTATAAAAGTCCGTTTTGCTCGAATGTGGGACAATATGAATGTTCGCAAGCAAAACGAAATGATTAGCATTGACATGGTGTTGATTGATGAACAGTCCAATTATATCCATGCATCACTTCCTAAGAAATTTGCACCCAAATTCAGGAAGAAAAACCTGCAAGAAGGAAAGATATATGTCGTCAAGCAATTTGAGGTGTTAGCCAATAAAAAGAGCTATGCTGTGGTTAAAAACAATTCTTCAATGTTGCAGTTCAATGATGATACCACATACAGTGAGGTGGAAGACGATGACATCATCCTTCTCCATGTTTTTGAGTTTGTTAAATATGCACATTTGGAATCTCGGATAGACAAACACGTGTTGACAGATATAATTGGAGTTATAGTTGATGTCAATCCAATTGAGGAAAGGAAAGTTCCTGGTGGTAAAGTGGATATGCTGTCAATTCGGCTGAAAGATATAAGTGGGAACATAATCAACGTCACGTTGTGGGGTCGGCATGCTACAATTTTTGAGGACACCCTGAAGGGGAATTTGTGTGACGCTCCTAACCCAAATGTTGCAGTCATCACATCCACTACATCTAAGAGATATCAGGAAAGCAGTTCCCATTGA 678 0.3909 MSPSQAYCFLNNLANATNESSIKVRFARMWDNMNVRKQNEMISIDMVLIDEQSNYIHASLPKKFAPKFRKKNLQEGKIYVVKQFEVLANKKSYAVVKNNSSMLQFNDDTTYSEVEDDDIILLHVFEFVKYAHLESRIDKHVLTDIIGVIVDVNPIEERKVPGGKVDMLSIRLKDISGNIINVTLWGRHATIFEDTLKGNLCDAPNPNVAVITSTTSKRYQESSSH 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04161 225 Gene3D - 120 225 IPR012340 -
Trre6g04161 225 SUPERFAMILY Nucleic acid-binding proteins 8 118 IPR012340 -
Trre6g04161 225 CDD RPA1_DBD_B_like 144 222 - -
Trre6g04161 225 SUPERFAMILY Nucleic acid-binding proteins 125 221 IPR012340 -
Trre6g04161 225 CDD RPA1_DBD_A_like 21 110 - -
Trre6g04161 225 Pfam Replication protein A OB domain 137 194 IPR031657 -
Trre6g04161 225 Gene3D - 8 117 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04161 Trre-Chr6 44341129 44342398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04161 10 203 Core DNA Replication Machinery Family AT4G19130 23.737 1.96e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04161 - - tpra:123895821 310.071