Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04156 ATGGACACAGCTCAGTGGGCACAGGGTAATATTGGATTGGTTAAACAAATGGATCATGGATCAGCTTCAAATTCAAAACCACCACCATCTTTGATAGAAAGAAGAGCAAGACCACAAAAAGATCAAGCTATAAACTGTCCAAGGTGCAATTCAACAAACACAAAATTTTGTTACTATAACAATTATAGTCTCTCTCAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTACCTGTTGGTGGTGGTTCAAGAAAAAACAAAAGATCAACATCATCATCATCATCACCTTCAATTTCATCATCACAATCACAACCTCAATTACCTCCTTCATCATCATTAACAAAAAATATTATCATTAATCATAATCATAATCCTGATCTGACTACTACTACTACTGCTAATACTAATACTACACATAATCATAATTTTCCACAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAGTTATAATACTATATCTAAATTTATTGAACTTCCATATAGTACTGAACATGATAAAACTACAAGTGCTATGGAGCTTTTGAAAACTGCTTCTTCTTCATCTAGGGGTTTGAATTCTTTTATGCCTATGAGTTTATCTGAGGGTAGTGCAATGTATAATTCAAGTGGTTTTGCTTTGCAAGATTTTAAGCTTGGTGTTAATTTTGGTTTAGAAGGTTTTGAGAATGGTTATGGTGGTTTACAAGGGATTAATCAAGAAGGTTCTGGTGGTGGTGTTGGCGGCGGTGCAAGGATGTTGTTTCCTGTTGTGGAAGAAGATCAGTTGAATAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAAGTTCCAAATAGTGGTGGTGAGTTTGATCATCATCATCAACATCATCAACAGAATAATAGAAATCAAGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAA 1029 0.3644 MDTAQWAQGNIGLVKQMDHGSASNSKPPPSLIERRARPQKDQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSSSPSISSSQSQPQLPPSSSLTKNIIINHNHNPDLTTTTTANTNTTHNHNFPQSASQNPKIHQGQDLNLAYPPQTTEDSYNTISKFIELPYSTEHDKTTSAMELLKTASSSSRGLNSFMPMSLSEGSAMYNSSGFALQDFKLGVNFGLEGFENGYGGLQGINQEGSGGGVGGGARMLFPVVEEDQLNKQQQQQQQQQQQQQQVPNSGGEFDHHHQHHQQNNRNQGDSTGYWNGMLGGGSW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04156 342 MobiDBLite consensus disorder prediction 93 162 - -
Trre6g04156 342 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 296 IPR045174 GO:0003700|GO:0006355
Trre6g04156 342 MobiDBLite consensus disorder prediction 287 342 - -
Trre6g04156 342 MobiDBLite consensus disorder prediction 287 310 - -
Trre6g04156 342 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Trre6g04156 342 Coils Coil 283 303 - -
Trre6g04156 342 MobiDBLite consensus disorder prediction 82 162 - -
Trre6g04156 342 MobiDBLite consensus disorder prediction 1 39 - -
Trre6g04156 342 Pfam Dof domain, zinc finger 41 98 IPR003851 GO:0003677|GO:0006355
Trre6g04156 342 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04156 Trre-Chr6 44295682 44297127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04156 34 342 C2C2-Dof Transcription Factor Family AT3G61850 36.474 4.92e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre6g04156 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04156 - - tpra:123909226 508.449