Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04142 ATGGCGTTATCAACTCCACAGATACAAAGATTCCTTATAACCAAACTCCATAGACGCTACTCCACTTCTTCCAAATCCAACAACTTTAACAGAAACAAAAACATCTTCAACAGTAGAAGAAGTCGTTGTTACTCTGCCATAGCCATTGATGCACCTTCATCATTGACAGATTCTCCTCCTATTAGATGGGGTTCTGTTTCTTTGCAGGGTCCTCGTGAAGAAATGGAAGATGATATTATTCTCAGACCTGATAGTCTTCAAGGTTTTTCTTTTGCTGCTGTTTTTGATGGTCATGGAGGCTTTGCTTCTGTCCAGTTTCTCAGGGAAGAGCTATACAAGGAGTGTCTTGAAGCTCTACAAGATGGATTACTATTGCTCGGGAAAGATTTCAAAGCTGTTGAAGACGCATTAAAACAGGCATTTGCTAAGGCTGACATGAAGCTGTTAAAATGGCTTGAAATGAAAGGGGAGGAGGAGGATGAATCAGGTGCTACCGCCACTGCCATATTCCTTGGAGATAATAAGCTGCTAATTTCCCATATTGGCGACTCATCTGTGGTTTTATGCAGATCTGGAAAACCAGAATTGCTGACAAGTCCTCATCGTCCATATGGGAGCAACACGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGGATTTGTGGAGATATTGCTGTATCTCGTGCATTTGGGGACATTCGATTCAAAACGAAGAAGAATGAGATGCTACGAAAAGGAGTTCAGGAAGGAAGGTGGACAGAAAAATACATTTCTCGTATACAGTTCAAAGATGACCTGGTTGTCGCACGCCCTGATATTTATCAAGTAACTCTCGGCTCAGATGCAGAATTTGTAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTTAGACGCAGTTACTTTTGTGAGGGATCAACTACGAAAACATGGAAACACGCAGCTAGCTTGCGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGACTGGAAGAATCTGCCATTGCAGCAACAAAATGTGATATTTGAGTTAGTCCAAGCCCTTGCCACAGTTGGAATTGTGTCTGTTGGAATCTGGTTTACATCACAGCTTTCTTTATAG 1179 0.4215 MALSTPQIQRFLITKLHRRYSTSSKSNNFNRNKNIFNSRRSRCYSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDIILRPDSLQGFSFAAVFDGHGGFASVQFLREELYKECLEALQDGLLLLGKDFKAVEDALKQAFAKADMKLLKWLEMKGEEEDESGATATAIFLGDNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNTASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLRKGVQEGRWTEKYISRIQFKDDLVVARPDIYQVTLGSDAEFVVLASDGLWDYMSSLDAVTFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKNLPLQQQNVIFELVQALATVGIVSVGIWFTSQLSL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04142 392 Pfam Protein phosphatase 2C 64 344 IPR001932 -
Trre6g04142 392 CDD PP2Cc 61 351 IPR001932 -
Trre6g04142 392 Gene3D - 61 358 IPR036457 -
Trre6g04142 392 PANTHER PROTEIN PHOSPHATASE 2C 33 349 IPR015655 GO:0004722|GO:0006470
Trre6g04142 392 SMART PP2C_4 52 349 IPR001932 -
Trre6g04142 392 SUPERFAMILY PP2C-like 56 352 IPR036457 -
Trre6g04142 392 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Trre6g04142 392 FunFam Protein phosphatase 2C 57 61 358 - -
Trre6g04142 392 ProSiteProfiles PPM-type phosphatase domain profile. 62 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04142 Trre-Chr6 43997550 44001547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04142 1 328 PP2C-type Phosphatase Gene Family AT4G27800 62.310 5.38e-148 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04142 K04457 - vra:106776113 571.237