Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04125 ATGGATTTCTTTGCAAAACCTGAAACCTCCAACTGGTTTTGTAACACTCAATCTCCACAAAACGACACAGACAAAATCATGGATATTTCACCATTTGATGACTTCCCCTTCGACATTGATTGGGCAACATACCAAAGTAACAAACTTTACATCAATGAGTTCAATGATCTTGAAAATTTCAACTTTAATTTCAACCTTCCAAACCTTTATGAAAATCTTGAGACAGAACAAAAACCCACCAATGTTGTTGTTTTGCCTGAATTGGTGAATAATAATGAAAAAGGTGAAAATGTTTGTCAGAGTGCTTTTTCTGAATTGTCAGAGGAAGTTGGAAATGGGTTTGTGAGTGTTGTCAAGAAAGAGATGAAATGGGTGGATCAAGATATGCCATTTGAAGAAAATCATTTTTCTGCTGCTGAGATTGGTTTTGTTGAAACTTCTGCAAAACATGGAAATGAGTTTGTGAACTTTGTCAAGAAAGAAAAGGAAGTGAAGAATCAAGAGTTTCCAAAATCATTGACATTGGCTAGTAGTAGTGTCATTAGGAAAAAGAAGTCATGTTCATTGCAATTTGATGAGATTAAGGAACATTTTGATGTTCCTATAACAATGGCTGCTAAGAAAATGAATGTTGGGGTTACCCTTTTGAAGAGAAGGTGTAGGGAACTCAATATCAATAGGTGGCCTCATAGAAAATTGAAGAGCTTGATGTTACTCATTGAACACCTTAAGGAAATGGGTTTGGAAAATGAGGTTGCAAAGTTGGAGAAACAAAAAAAGATGTTGGAGAAAATTCCAGGAATGGAATTGAATGAAGAAATCAAGAAGCTAAGGCAATCATGTTTTAAAGCTAATTACAAGAAGAGACAATCAAGTGTTTTCCATCATTGA 891 0.349 MDFFAKPETSNWFCNTQSPQNDTDKIMDISPFDDFPFDIDWATYQSNKLYINEFNDLENFNFNFNLPNLYENLETEQKPTNVVVLPELVNNNEKGENVCQSAFSELSEEVGNGFVSVVKKEMKWVDQDMPFEENHFSAAEIGFVETSAKHGNEFVNFVKKEKEVKNQEFPKSLTLASSSVIRKKKSCSLQFDEIKEHFDVPITMAAKKMNVGVTLLKRRCRELNINRWPHRKLKSLMLLIEHLKEMGLENEVAKLEKQKKMLEKIPGMELNEEIKKLRQSCFKANYKKRQSSVFHH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04125 296 Pfam RWP-RK domain 189 236 IPR003035 -
Trre6g04125 296 ProSiteProfiles RWP-RK domain profile. 176 257 IPR003035 -
Trre6g04125 296 PANTHER PROTEIN RKD4 123 291 IPR044607 GO:0003700
Trre6g04125 296 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04125 Trre-Chr6 43793214 43794668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04125 189 291 AtRKD Transcription Factor Family AT5G53040 59.223 6.26e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre6g04125 RWP-RK 7.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04125 - - psat:127081861 268.855