Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04118 ATGCATCACCATCACCATCACCATCACTCCCAATCCCCATCTCCATTAATATCATCATCATCATCATCATCATCATCATCAGCAGTAGATTTCAGTCCACCACTAATAGCAATGGTTGTCGTCGTCGCCGCCGCATTCGTCATCGTAACATATTCCCGTCTCATAACTCGTCACTTATCCCCTCCCATCCAACGTCTAATCCAACGTTTCCACCGCCGTGATCCACCTTCCTCCTCCTTAGGCGACATCGAATCTCTTCAATACGATTCAACAACTTTCGAAACTCCACTCACTTACGGTTTAGACGAATCCGTTATAAAAACAATTCCATTCTTCATTTACACAAGTACTAAATACGAACAAGAACAAGAATCTCTCCGTGACTGCGCCGTTTGTTTACTCGAATTCGAAGATCACGATTACGTTCGTACTCTTCCTCTTTGTTCTCACACTTTTCATCTTGATTGTATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGTTCTCTTCTTCTCTGTGATTCTCCTTTTAGACCTCTTATGGCTGCGAGAATTCGTCCTTCTTTTCATGATCAAACTAATGTTCTTCACATTGATACTCCTTTTCATAACTCTGTTTCACCGGTGCCGGAGATTACTCCTCATTCTCCTGCTATGAGTACTGTTGATGAAAATCGGTTTACAGGACGGCAGGATTTTCTGTTGAAACGATCTTATTCGTTTGGATTTGAGAGGAGTTTACCGTCGGAGAGGATGGTAATTGATCCTGCTACAACCTCACCGTGGCGGTACCGTAGAGGAAGCACCGGTTTCTGGAACAAAAGACCGTCACCGTTTGGTTCCCTTGGGAAGTCGAGAGTGTTTTCATTCAGGTATTATAGAGGAATGAAATCACCGTTCTTCCGACGGAGAGGATTTTTTCCGTTGTCGGAGTCGAGTAACAGGTACGCCGCCGACGGAGGAAGTTCATGGCGGAGGAGTAAGTCAATAGCGAGTCCGATGTTTTTAAGATCTTCAGCGGCGGTATTCTCGTCGAGTCGGTTAAGATGCGGTGATCCGGAGGCGTTACTATCGCCGGAGAGATTTAACCGGCGACGATGA 1110 0.455 MHHHHHHHHSQSPSPLISSSSSSSSSSAVDFSPPLIAMVVVVAAAFVIVTYSRLITRHLSPPIQRLIQRFHRRDPPSSSLGDIESLQYDSTTFETPLTYGLDESVIKTIPFFIYTSTKYEQEQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCDSPFRPLMAARIRPSFHDQTNVLHIDTPFHNSVSPVPEITPHSPAMSTVDENRFTGRQDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGSTGFWNKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSNRYAADGGSSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04118 369 CDD RING-H2_EL5-like 128 171 - -
Trre6g04118 369 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g04118 369 PANTHER RING-H2 FINGER PROTEIN ATL16 12 185 IPR044600 GO:0016567|GO:0016740
Trre6g04118 369 FunFam RING-H2 finger protein ATL65 94 175 - -
Trre6g04118 369 SMART ring_2 129 170 IPR001841 -
Trre6g04118 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 175 IPR013083 -
Trre6g04118 369 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Trre6g04118 369 Pfam Ring finger domain 128 171 IPR001841 -
Trre6g04118 369 SUPERFAMILY RING/U-box 105 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04118 Trre-Chr6 43706043 43707152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04118 22 368 C3H Transcription Factor Family AT3G18930 50.649 1.42e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04118 - K19041 gmx:100806115 461.07