Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04115 ATGGGTAAGAAAGGAAGCAGTTGGTTCTCATCGGTGAAGAAAGTTTTCAAGTCTTCTTCAAAGGATTCGCCGGTGCCGGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAGGTATCTTTGGAACATTTTCCTGCATATAGTTCACCAGATATCACAAATGAAGGAAGTACCACATCAACACCAATGACTGAAGAAAGAAACCATGCTATTGCCTATGCAGTAGCAACAGCAGCAGCAGCTGAAGCTGCAGTGACAGCAGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTTATGGACGTAACTATAAGGAAGAAAAAGCAGCAATACTCATTCAATCATACTATAGAGGATACCTAGCTCGACGCGCACTGCGTGCTTTGAAGGGGTTGGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGAGGAAACAAGCACAAATGACAATGCGATGCATGCAAGCATTGGTAAGAGTACAGGGAAGAGTAAGAGCTAGAAGACTCCAATTGACTCATGAGAAACATCATAGGACATTGGAGGAACAGCATCCTGTGACGATGTTTGATACAAGTGGTTGGGACTATAGGCGTCAAAGTAGCCACAAAATTAAGGAAAATGATTTCAGGAAATATGGAACTACAATGAATAAGGACAAACCTCTTCCTTACGCTTTCAACCACCAGCAACAACAAAAGCAATATTTGCATATAGATCCAAGTGTTGATGATATTGAAAGTTATGGCAATGAACGTGCAAGAGCTCAATTGGATTGGAATTGGTTGGAACGTTGGATGTTAACACAATCACACAATGTTAGGCCTATAGGGTTGGGCCCACTTGAGACCCCACCATATACACCCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTGCACCTAGAGACTCAATCCATGCAAACATAGGACAAATGAACCAAGAATTTCATGATTTAAGCCCAATTGCTAAACACCACCAACGACAGCATAGTGGAGGTGTGCCTAGCTATATGGCCCCAACCCAATCTGCAAAGGCCAAGATTCGGAGTCATGGCCCATTAAAGCACCGGGCTTCATTTGGGTCTTATTGGAACTCATCATTAAGGAGTCCTCCAAGTGGGCTGGGCTATGAATCATCTGGCTCTGGTGGGGCCCCTGCTACTCATCCGATTACGAGAAGCCCAAGCCCAAAAATTAATGGGCTTCGTCTTCAATCGAAACGGATTACGGGTGTTGGCCCAGAAAAAGTTGGTGTTGAGGATTGGCCCAACCATCATGGAGCTCACGCTTGGGCTAGATTTGATTGA 1338 0.4469 MGKKGSSWFSSVKKVFKSSSKDSPVPENKKEKEENWQHEAAEEVSLEHFPAYSSPDITNEGSTTSTPMTEERNHAIAYAVATAAAAEAAVTAAQAAARVVRLAGYGRNYKEEKAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQGRVRARRLQLTHEKHHRTLEEQHPVTMFDTSGWDYRRQSSHKIKENDFRKYGTTMNKDKPLPYAFNHQQQQKQYLHIDPSVDDIESYGNERARAQLDWNWLERWMLTQSHNVRPIGLGPLETPPYTPTDDMSEEKTVEMDMVAPRDSIHANIGQMNQEFHDLSPIAKHHQRQHSGGVPSYMAPTQSAKAKIRSHGPLKHRASFGSYWNSSLRSPPSGLGYESSGSGGAPATHPITRSPSPKINGLRLQSKRITGVGPEKVGVEDWPNHHGAHAWARFD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04115 445 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Trre6g04115 445 SMART iq_5 133 154 IPR000048 GO:0005515
Trre6g04115 445 SMART iq_5 110 132 IPR000048 GO:0005515
Trre6g04115 445 MobiDBLite consensus disorder prediction 381 413 - -
Trre6g04115 445 MobiDBLite consensus disorder prediction 395 413 - -
Trre6g04115 445 Gene3D - 108 164 - -
Trre6g04115 445 Pfam Protein of unknown function (DUF4005) 330 367 IPR025064 -
Trre6g04115 445 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Trre6g04115 445 PANTHER IQ-DOMAIN 5-RELATED 1 380 - -
Trre6g04115 445 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Trre6g04115 445 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Trre6g04115 445 MobiDBLite consensus disorder prediction 23 40 - -
Trre6g04115 445 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04115 Trre-Chr6 43666977 43671120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04115 1 408 IQD Protein Family AT3G49260 47.333 1.17e-87 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04115 - - psat:127081873 578.556