Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04114 ATGACTGTGCTGGCTGTAAAGAGACAGATGGGTAAGAAAGGAAGCAGTTGGTTCTCATCGGTGAAGAAAGTTTTCAAGTCTTCTTCAAAGGATTCGCCGGTGCCGGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAGGTATCTTTGGAACATTTTCCTGCATATAGTTCACCAGATATCACAAATGAAGGAAGTACCACATCAACACCAATGACTGAAGAAAGAAACCATGCTATTGCCTATGCAGTAGCAACAGCAGCAGCAGCTGAAGCTGCAGTGACAGCAGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTTATGGACGTAACTATAAGGAAGAAAAAGCAGCAATACTCATTCAATCATACTATAGAGGATACCTAGCTCGACGCGCACTGCGTGCTTTGAAGGGGTTGGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGAGGAAACAAGCACAAATGACAATGCGATGCATGCAAGCATTGGTAAGAGTACAGGGAAGAGTAAGAGCTAGAAGACTCCAATTGACTCATGAGAAACATCATAGGACATTGGAGGAACAGCATCCTGTGACGATGTTTGATACAAGTGGTTGGGACTATAGGCGTCAAAGTAGCCACAAAATTAAGGAAAATGATTTCAGGAAATATGGAACTACAATGAATAAGGACAAACCTCTTCCTTACGCTTTCAACCACCAGCAACAACAAAAGCAATATTTGCATATAGATCCAAGTGTTGATGATATTGAAAGTTATGGCAATGAACGTGCAAGAGCTCAATTGGATTGGAATTGGTTGGAACGTTGGATGTTAACACAATCACACAATGTTAGGCCTATAGGGTTGGGCCCACTTGAGACCCCACCATATACACCCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATGGTTGCACCTAGAGACTCAATCCATGCAAACATAGGACAAATGAACCAAGAATTTCATGATTTAAGCCCAATTGCTAAACACCACCAACGACAGCATAGTGGAGGTGTGCCTAGCTATATGGCCCCAACCCAATCTGCAAAGGCCAAGATTCGGAGTCATGGCCCATTAAAGCACCGGGCTTCATTTGGGTCTTATTGGAACTCATCATTAAGGAGTCCTCCAAGTGGGCTGGGCTATGAATCATCTGGCTCTGGTGGGGCCCCTGCTACTCATCCGATTACGAGAAGCCCAAGCCCAAAAATTAATGGGCTTCGTCTTCAATCGAAACGGATTACGGGTGTTGGCCCAGAAAAAGTTGGTGTTGAGGATTGGCCCAACCATCATGGAGCTCACGCTTGGGCTAGATTTGATTGA 1365 0.4476 MTVLAVKRQMGKKGSSWFSSVKKVFKSSSKDSPVPENKKEKEENWQHEAAEEVSLEHFPAYSSPDITNEGSTTSTPMTEERNHAIAYAVATAAAAEAAVTAAQAAARVVRLAGYGRNYKEEKAAILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQGRVRARRLQLTHEKHHRTLEEQHPVTMFDTSGWDYRRQSSHKIKENDFRKYGTTMNKDKPLPYAFNHQQQQKQYLHIDPSVDDIESYGNERARAQLDWNWLERWMLTQSHNVRPIGLGPLETPPYTPTDDMSEEKTVEMDMVAPRDSIHANIGQMNQEFHDLSPIAKHHQRQHSGGVPSYMAPTQSAKAKIRSHGPLKHRASFGSYWNSSLRSPPSGLGYESSGSGGAPATHPITRSPSPKINGLRLQSKRITGVGPEKVGVEDWPNHHGAHAWARFD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04114 454 Gene3D - 118 173 - -
Trre6g04114 454 MobiDBLite consensus disorder prediction 404 422 - -
Trre6g04114 454 MobiDBLite consensus disorder prediction 390 424 - -
Trre6g04114 454 Pfam IQ calmodulin-binding motif 147 162 IPR000048 GO:0005515
Trre6g04114 454 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515
Trre6g04114 454 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Trre6g04114 454 SMART iq_5 142 163 IPR000048 GO:0005515
Trre6g04114 454 SMART iq_5 119 141 IPR000048 GO:0005515
Trre6g04114 454 MobiDBLite consensus disorder prediction 25 48 - -
Trre6g04114 454 PANTHER IQ-DOMAIN 5-RELATED 10 389 - -
Trre6g04114 454 MobiDBLite consensus disorder prediction 32 48 - -
Trre6g04114 454 ProSiteProfiles IQ motif profile. 144 171 IPR000048 GO:0005515
Trre6g04114 454 Pfam Protein of unknown function (DUF4005) 339 376 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04114 Trre-Chr6 43666950 43671120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04114 10 417 IQD Protein Family AT3G49260 48.000 1.14e-87 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04114 - - psat:127081873 578.556