Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04109 ATGGACTTGGATAATATTGAGTGTGTGTCATCTTCTGATGGAATGGAAGAGGATGAGATCCATTCACACCATCACTCTGAATTTTCTTCCACAAAGCATAGAAATGGTGCCACAAATATTAATAATATTTTGGGTCCAAATGGTATCACTCCTGCAACCAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCACAATGGCCACACTATATGTTCCACATGCAAAACGCGAGTGCATAACCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAAAAGGTGGCTGAATCACTTGAGTTACCGTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGGCCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGCGATATTCCCTTTCTTGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACTGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCACTGTTTTGGTCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGCGATGAAAATGATGCTCGGAACTACAGCTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACGCCTCGAAGTGTTCGGGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGCCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTCACAGGAAGAATTTGGAAGGAACAGAATCAAGAAAATGGAGTGTGCATACCTAATATTTGTAGTTGA 969 0.4262 MDLDNIECVSSSDGMEEDEIHSHHHSEFSSTKHRNGATNINNILGPNGITPATSVHELLECPVCTNSMYPPIHQCHNGHTICSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQENGVCIPNICS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04109 322 MobiDBLite consensus disorder prediction 14 31 - -
Trre6g04109 322 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Trre6g04109 322 SUPERFAMILY RING/U-box 53 101 - -
Trre6g04109 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 113 IPR013083 -
Trre6g04109 322 SUPERFAMILY TRAF domain-like 114 306 - -
Trre6g04109 322 MobiDBLite consensus disorder prediction 1 34 - -
Trre6g04109 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 167 IPR013083 -
Trre6g04109 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 36 308 - -
Trre6g04109 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 302 IPR008974 GO:0005515
Trre6g04109 322 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre6g04109 322 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Trre6g04109 322 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Trre6g04109 322 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Trre6g04109 322 CDD Sina 175 303 - -
Trre6g04109 322 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Trre6g04109 322 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04109 Trre-Chr6 43594329 43596803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04109 27 309 C3H Transcription Factor Family AT2G41980 75.618 1.89e-163 456