Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04102 ATGGAGTATGGAAGGTTAGGACTATCCGAGCCTGGAGGCTCGTCTCCCTCCCTCTCCGAACCTACAATGTTCACATCCAAACCTAGATCTTCTAAGAAGAAAATCGTTTTTCTTTCACTACTTGCTGTGTTACTAATAGTTGTCTCCGCCGTCTCAGCCGCAATGCTCACCGGAATCCATTACCGAACATCCGAACCAAAAAATCCAACTCTAAAACGTAATCCAACACAAGCAATTTCAAAAACATGTAGCAAAACTCGTTTTCCATCACTATGTGAAAATTATCTTCTCGATTTTCTTGGATCCGATGTTGCATCGGAAAAAGACTTAATCCACATTTCACTCAACATGACACTACAACACATTTCAAAAGCACTTTATTCCTCCGCCGCTATCTCATCCACCGTCGGCATGAATCCTCGCATCCGCGCCGCTTATATAGATTGTCTCGAACTTCTAGACGATTCCGTCGATGCACTTGCTCGTTCACTCACTTCCGTCGTACCTCCATCTTCCTCCGGTTCCGTTAAGCCTCTTACAGCTTCCTCAACAGACGATGTACTCACGTGGCTCAGCGCCGCGCTAACTAACCAAGACACGTGTGCTGACGGTTTCTCCGACGTTTCCGGATCCGTGAAGGATCAGATGGCGAGTAACATAAAAGATTTGTCAGAGCTTGTAAGTAATTGTTTAGCTATTTTCTCTGCTTCCGGTGCCGGAGATGATTTCTCCGGTGTTCCGATAGGGAATAAGAGACGGTTAATGACAATGCCAGAGGATGATGAGTTTCCGGTATGGTTGAAAAAACGTGAGAGGAGGCTGTTGAGTTTGCCGGTGACGGCGATACAAGCGGATGTGGTTGTTTCTAAAGACGGTAACGGAACGGTGAAAACTATAGAGGAAGCACTTAAGAAGATACCTGAGTATGGTAACCGACGGTTTATTATCTATATCAAACAAGGAAGGTACGAAGAGGACAATTTAAAGATAGGAAGGAAGAAAACTAATGTCATGATCATAGGAGACGGAAAGGGAAAGACAGTGATCACAGGAGGCAAAAATGTTTTGCAAAACTTGACCACATTTCACACCGCTTCCTTTGCTGCAAGTGGTCCAGGTTTCATTGCAAGAGATGTAACATTTGAGAATTACGCCGGACCGGCGAAACACCAAGCGGTGGCTCTCCGTGTCGGATCGGACCATGCGGTGGTGTACCGTTGCAATATCATTGGATACCAAGACACAATGTATGCACACTCAAACCGTCAATTCTACCGTGAATGCGACATTTATGGTACTGTAGACTTCATATTTGGCAATGCTGCAGTTGTTTTTCAAAATTGTAGCCTCTATGCACGCAAACCCATGCCCCAACAAAAAAACACCATCACGGCCCAAAATAGAAAAGACCCGAATCAAAACACAGGTATATCCATCCACAATTGTCGGATCCTTGCCACGTCGGATCTACAAGCATCCAAGGGTAGCTATCCAACATATCTAGGCCGTCCGTGGAAATTATACTCTAGAACAGTGTACATGTTATCGTACATGGGTGATCATTTACATCCACGTGGATGGTTAGAATGGAATACAACTTTTGCTCTAGACACTTTGTATTATGGCGAGTACATGAATTATGGGCCGGGTGGAGCTATTGGACAAAGAGTCCAATGGCCCGGGTATCGGGTTATTACATCCACCGTGGAAGCGAATAGATTCACGGTGGCCCAATTCATATCGGGATCAACTTGGATACCGTCTACTGGGGTTGCATTCGTAGCTGGCTTATCCACCTGA 1800 0.4522 MEYGRLGLSEPGGSSPSLSEPTMFTSKPRSSKKKIVFLSLLAVLLIVVSAVSAAMLTGIHYRTSEPKNPTLKRNPTQAISKTCSKTRFPSLCENYLLDFLGSDVASEKDLIHISLNMTLQHISKALYSSAAISSTVGMNPRIRAAYIDCLELLDDSVDALARSLTSVVPPSSSGSVKPLTASSTDDVLTWLSAALTNQDTCADGFSDVSGSVKDQMASNIKDLSELVSNCLAIFSASGAGDDFSGVPIGNKRRLMTMPEDDEFPVWLKKRERRLLSLPVTAIQADVVVSKDGNGTVKTIEEALKKIPEYGNRRFIIYIKQGRYEEDNLKIGRKKTNVMIIGDGKGKTVITGGKNVLQNLTTFHTASFAASGPGFIARDVTFENYAGPAKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHNCRILATSDLQASKGSYPTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVQWPGYRVITSTVEANRFTVAQFISGSTWIPSTGVAFVAGLST 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04102 599 Pfam Plant invertase/pectin methylesterase inhibitor 78 233 IPR006501 GO:0004857
Trre6g04102 599 PANTHER PECTINESTERASE 45 587 - -
Trre6g04102 599 SMART PMEI_2 74 233 IPR006501 GO:0004857
Trre6g04102 599 NCBIfam pectinesterase inhibitor domain 56 234 IPR006501 GO:0004857
Trre6g04102 599 FunFam Pectinesterase 279 597 - -
Trre6g04102 599 Gene3D - 279 597 IPR012334 -
Trre6g04102 599 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 236 IPR035513 -
Trre6g04102 599 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 235 IPR035513 -
Trre6g04102 599 SUPERFAMILY Pectin lyase-like 280 596 IPR011050 -
Trre6g04102 599 CDD PMEI-like_3 83 236 - -
Trre6g04102 599 Pfam Pectinesterase 285 582 IPR000070 GO:0030599|GO:0042545
Trre6g04102 599 MobiDBLite consensus disorder prediction 1 26 - -
Trre6g04102 599 ProSitePatterns Pectinesterase signature 2. 430 439 IPR033131 -
Trre6g04102 599 MobiDBLite consensus disorder prediction 12 26 - -
Trre6g04102 599 FunFam Pectinesterase 75 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04102 Trre-Chr6 43530497 43535386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04102 1 598 Carbohydrate Esterase AT5G53370 65.391 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04102 - - gmx:106796002 864.759