Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04088 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGAGTTTGAAACGGTGTAAACTCGCTGACTCAGTTGAAGAAGACAACGACTGTTCTGATTCTAATGCTCGTAAGAAGAGAAAAACCAACGGTTATTATTATCCTTTGGACCTTTTAGGTGATGTTGCCGCTGCTTTAATTCCGGCGAGTTTTCACGGTTTACTTAGTTCCGGTGTATCGGAGAAGGGATTGTCTGCATCGTGGTGCACGCAAGTTCCGTGCTCCCCCGGTGAAGTTGAATCGAATTCGAAACAAGAAATGGTTCCGGTGAAGAAAAAACAGGTTCAGCGACCACGGCCGCCACTTGTTCGAACTTCGAGAGGGCGTGTTCAGGTTCTTCCTTCGAAGTTTAATGATTCTGTTCTTGATAATTGGAAGAAGGATAGTAATAAGCCTAGCTTGCGTGATTGTGAAGTTGTTGATGAATTTGAATGCAAGAAGGACAAGGTAGTATCGAAAATTTGCATCAACAATGTTAAAAAAGGGCGAAACGATGAGAAAATCGGTTATAAGCATCGTAAGTATTCAGCATTGTATGAGGATGATGATGTTGATGTTGGTGTGAGTGTGAGGCATAGGAGTTTTGGTAGAAGGAAAGATTCAGCTTTGGATGGAGATGAAGTTGATTGGATGATGAGTTGTGATGATAAAGTTGATTGCAGGGAGAATAATGGAGAGAGGAAAGATGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATGGTTTGGGCCAAAGCTGGAAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGCTTGTTCTTAGGTCTTTTATAGCTGATGCTGCTTGTGTCATGTTTCTCGGCAATGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTCTGGATTATGTAGACAGGTTTCAAGAGCAGTCTGAATTGAGTAACTATAGTCCCTCTGAATTCCAAATGGCAATAGAAGAAGCATTTTTGGCAGACCAAGGCTTTTCAGAGAAGTTGATAGATGATATAAATGCAGCAGCTGGTGCCACTGGTTACGATGATACTATTCTGAAATCTTTCAAGGTGGTCCATGGTTCAAACCAGTATGGAGGAACAGGAAAGCATTTTCTTAACCAGGATTCATTTGATAAGAAAGACGCGAGATCATGTGAAGCCTGTGGATTGGATCTTCCTTACAAGATGTCAAAGAAAACTAAGGGTTTGACTCCTAATGGTCAATTGCTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGTTGTGATGGATGTAAAGTGTGGGTGCACGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACCGATTATTTCTGCCCTACATGCAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAGAAAACGACAAAGACAAAAGTCAAATCGAGCAGAAACGGTGGCCAGCTAATGCTTTCAATTAAGGTCAATGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTACACTTAGTTATATGCAAGTGTGGTTTTTGTGGGCCAGAAAAGCAAGCGCTTAGCGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAAAACAAGTATTACCGTGAAAGACTCTAGGCTACCTCTGGAACAATGGATGCTGCAGGTTGCAGAAAATCATGCTAATGCTCTAGTTTCTGTCAAACCGAAAAAACCTTCTTTAAAGGAAAGGAAGCATAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTCTATGCTAAGTGGACCACGGAGCGTTGCGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAAAAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACCGATATTCACACATTATGGGTTCATGTTACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGACGATGGAACCTGCTTTGGGTATTCTTAGTATTCCGTCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATCCATGGTTCCTGCACACAGTGTTGCAAATGTTCCACTTATTTCCATGCCATGTGCGCATCAAGGGCCGGTTACCGAATGGAGCTGCATTGCTTAAAGAAAAATGGAAAACAAACAACAAAAATGGTTTCTTACTGTGCTTACCACAGAGCTCCAAATCCCGACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTAATTTCAACCAAAAGCCTTCTCCAAAAGAGAAAAGTTGGATCAAGATTAATCTCATCTACCAGATCAAAGAAAGACGACACTGCTATTGAAATCTCTGAGCATGACCCTTTCTCTGCGGCTAGGTGTCGTATTTATAAAAGAACAAATCATATGAAAAAGAGAGCAGCAGATGAAGCCATTTATCATAAAGCGAGGGGTCACTGCCACCATCCTTTAGATGCAATACAGAGTTTGAATACATACAGAGCAGTAGTAGAGGAGCCTCAAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCATTTGCAGAGAACTGAAAATCAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTAAGACGCAGCATTGCTGATCTGAGGGAGGCGCGCTATAGAGCAGAAGGAAAAGATTGCTACCTGTTTAAGATAAGCGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAACATAGCACGGCTAATAAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGCGATGATCAGAGCCGGATTGTACTCATCGCAAAGACTAACGTAGCTGCTGGTGACGAGCTAACCTACGACTATTTATTCGATCCTGACGAGCCAGATGAATTTAAAGTCCCTTGCATGTGTAAAGCTCCAAATTGCAGGAAATTCATGAATTAG 3216 0.4185 MIIKRNLKSQMPSLKRCKLADSVEEDNDCSDSNARKKRKTNGYYYPLDLLGDVAAALIPASFHGLLSSGVSEKGLSASWCTQVPCSPGEVESNSKQEMVPVKKKQVQRPRPPLVRTSRGRVQVLPSKFNDSVLDNWKKDSNKPSLRDCEVVDEFECKKDKVVSKICINNVKKGRNDEKIGYKHRKYSALYEDDDVDVGVSVRHRSFGRRKDSALDGDEVDWMMSCDDKVDCRENNGERKDGLYGPEDFYAGDMVWAKAGRKEPFWPAVVIDPMKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFLDYVDRFQEQSELSNYSPSEFQMAIEEAFLADQGFSEKLIDDINAAAGATGYDDTILKSFKVVHGSNQYGGTGKHFLNQDSFDKKDARSCEACGLDLPYKMSKKTKGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYFCPTCRGKFDFELSDSEKTTKTKVKSSRNGGQLMLSIKVNVLCNGVEGIYFPSLHLVICKCGFCGPEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAENHANALVSVKPKKPSLKERKHKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDETMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLKKNGKQTTKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKRKVGSRLISSTRSKKDDTAIEISEHDPFSAARCRIYKRTNHMKKRAADEAIYHKARGHCHHPLDAIQSLNTYRAVVEEPQAFSSFRERLYHLQRTENQRVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDQSRIVLIAKTNVAAGDELTYDYLFDPDEPDEFKVPCMCKAPNCRKFMN 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04088 1071 PANTHER PHD FINGER PROTEINS 59 506 - -
Trre6g04088 1071 ProSiteProfiles Zinc finger PHD-type profile. 637 688 IPR019787 -
Trre6g04088 1071 ProSiteProfiles Extended PHD (ePHD) domain profile. 691 806 IPR034732 -
Trre6g04088 1071 SMART set_7 929 1052 IPR001214 GO:0005515
Trre6g04088 1071 MobiDBLite consensus disorder prediction 91 116 - -
Trre6g04088 1071 SUPERFAMILY FYVE/PHD zinc finger 638 702 IPR011011 -
Trre6g04088 1071 FunFam Histone-lysine N-methyltransferase 627 688 - -
Trre6g04088 1071 ProSiteProfiles SET domain profile. 929 1046 IPR001214 GO:0005515
Trre6g04088 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 688 IPR013083 -
Trre6g04088 1071 Pfam PWWP domain 251 344 IPR000313 -
Trre6g04088 1071 SUPERFAMILY SET domain 922 1068 IPR046341 -
Trre6g04088 1071 SUPERFAMILY Tudor/PWWP/MBT 243 347 - -
Trre6g04088 1071 CDD PHD_TCF19_like 445 495 - -
Trre6g04088 1071 ProSitePatterns Zinc finger PHD-type signature. 640 685 IPR019786 -
Trre6g04088 1071 FunFam Histone-lysine N-methyltransferase 689 808 - -
Trre6g04088 1071 CDD SET_SETD1-like 916 1067 - -
Trre6g04088 1071 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1071 IPR025780 -
Trre6g04088 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 499 IPR013083 -
Trre6g04088 1071 Gene3D - 245 351 - -
Trre6g04088 1071 Pfam PHD-zinc-finger like domain 693 805 - -
Trre6g04088 1071 Pfam SET domain 940 1045 IPR001214 GO:0005515
Trre6g04088 1071 Gene3D SET domain 833 1071 IPR046341 -
Trre6g04088 1071 ProSiteProfiles Zinc finger PHD-type profile. 442 498 IPR019787 -
Trre6g04088 1071 CDD PWWP_AtATX3-like 249 353 - -
Trre6g04088 1071 Pfam PHD-finger 652 686 - -
Trre6g04088 1071 SUPERFAMILY FYVE/PHD zinc finger 441 500 IPR011011 -
Trre6g04088 1071 SMART PHD_3 750 806 IPR001965 -
Trre6g04088 1071 SMART PHD_3 444 496 IPR001965 -
Trre6g04088 1071 SMART PHD_3 639 686 IPR001965 -
Trre6g04088 1071 CDD PHD_ATX3_4_5_like 639 685 IPR042011 -
Trre6g04088 1071 CDD ePHD_ATX3_4_5_like 694 805 IPR041955 -
Trre6g04088 1071 ProSiteProfiles PWWP domain profile. 250 319 IPR000313 -
Trre6g04088 1071 Pfam PHD-finger 444 496 IPR019787 -
Trre6g04088 1071 ProSiteProfiles Post-SET domain profile. 1055 1071 IPR003616 -
Trre6g04088 1071 FunFam Histone-lysine N-methyltransferase 903 1071 - -
Trre6g04088 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 808 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04088 Trre-Chr6 43323991 43331019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04088 640 805 C2H2 Transcription Factor Family AT3G14740 33.526 9.37e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g04088 zf-HC5HC2H_2 1.2e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04088 - - aprc:113853254 1754.18